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Items: 18

1.

Quantitative comparison of taxa and taxon concepts in the diatom genus Fragilariopsis: a case study on using slide scanning, multiexpert image annotation, and image analysis in taxonomy1.

Beszteri B, Allen C, Almandoz GO, Armand L, Barcena MÁ, Cantzler H, Crosta X, Esper O, Jordan RW, Kauer G, Klaas C, Kloster M, Leventer A, Pike J, Rigual Hernández AS.

J Phycol. 2018 Oct;54(5):703-719. doi: 10.1111/jpy.12767. Epub 2018 Aug 28.

2.

In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice.

Uhlig C, Kilpert F, Frickenhaus S, Kegel JU, Krell A, Mock T, Valentin K, Beszteri B.

ISME J. 2015 Nov;9(11):2537-40. doi: 10.1038/ismej.2015.43. Epub 2015 Apr 17.

3.

Potential effects of climate change on the distribution range of the main silicate sinker of the Southern Ocean.

Pinkernell S, Beszteri B.

Ecol Evol. 2014 Aug;4(16):3147-61. doi: 10.1002/ece3.1138. Epub 2014 Jul 22.

4.

SHERPA: an image segmentation and outline feature extraction tool for diatoms and other objects.

Kloster M, Kauer G, Beszteri B.

BMC Bioinformatics. 2014 Jun 25;15:218. doi: 10.1186/1471-2105-15-218.

5.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

6.

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.

Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ.

ISME J. 2013 Jul;7(7):1322-32. doi: 10.1038/ismej.2013.32. Epub 2013 Mar 7.

7.

Putative monofunctional type I polyketide synthase units: a dinoflagellate-specific feature?

Eichholz K, Beszteri B, John U.

PLoS One. 2012;7(11):e48624. doi: 10.1371/journal.pone.0048624. Epub 2012 Nov 5.

8.

The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella.

Alverson AJ, Beszteri B, Julius ML, Theriot EC.

BMC Evol Biol. 2011 May 14;11:125. doi: 10.1186/1471-2148-11-125.

9.

The Ectocarpus genome and the independent evolution of multicellularity in brown algae.

Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P.

Nature. 2010 Jun 3;465(7298):617-21. doi: 10.1038/nature09016.

PMID:
20520714
10.

Average genome size: a potential source of bias in comparative metagenomics.

Beszteri B, Temperton B, Frickenhaus S, Giovannoni SJ.

ISME J. 2010 Aug;4(8):1075-7. doi: 10.1038/ismej.2010.29. Epub 2010 Mar 25.

PMID:
20336158
11.

Genomic footprints of a cryptic plastid endosymbiosis in diatoms.

Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D.

Science. 2009 Jun 26;324(5935):1724-6. doi: 10.1126/science.1172983.

12.

Implications of life-history transitions on the population genetic structure of the toxigenic marine dinoflagellate Alexandrium tamarense.

Alpermann TJ, Beszteri B, John U, Tillmann U, Cembella AD.

Mol Ecol. 2009 May;18(10):2122-33. doi: 10.1111/j.1365-294X.2009.04165.x. Epub 2009 Apr 14.

PMID:
19389181
13.

STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design.

Kraemer L, Beszteri B, Gäbler-Schwarz S, Held C, Leese F, Mayer C, Pöhlmann K, Frickenhaus S.

BMC Bioinformatics. 2009 Jan 30;10:41. doi: 10.1186/1471-2105-10-41.

14.

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.

Nature. 2008 Nov 13;456(7219):239-44. doi: 10.1038/nature07410. Epub 2008 Oct 15.

PMID:
18923393
15.

Novel insights into evolution of protistan polyketide synthases through phylogenomic analysis.

John U, Beszteri B, Derelle E, Van de Peer Y, Read B, Moreau H, Cembella A.

Protist. 2008 Jan;159(1):21-30. Epub 2007 Oct 10.

PMID:
17931970
16.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
17.
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