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Items: 1 to 20 of 41


Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation.

Jeong H, Arif B, Caetano-Anollés G, Kim KM, Nasir A.

Sci Rep. 2019 Apr 11;9(1):5953. doi: 10.1038/s41598-019-42227-5.


Testing Empirical Support for Evolutionary Models that Root the Tree of Life.

Caetano-Anollés D, Nasir A, Kim KM, Caetano-Anollés G.

J Mol Evol. 2019 Apr;87(2-3):131-142. doi: 10.1007/s00239-019-09891-7. Epub 2019 Mar 18.


Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes.

Colson P, Levasseur A, La Scola B, Sharma V, Nasir A, Pontarotti P, Caetano-Anollés G, Raoult D.

Front Microbiol. 2018 Nov 27;9:2668. doi: 10.3389/fmicb.2018.02668. eCollection 2018.


Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions.

Caetano-Anollés G, Nasir A, Kim KM, Caetano-Anollés D.

Evol Bioinform Online. 2018 Oct 20;14:1176934318805101. doi: 10.1177/1176934318805101. eCollection 2018. Review.


Order and polarity in character state transformation models that root the tree of life.

Caetano-Anollés K, Caetano-Anollés D, Nasir A, Kim KM, Caetano-Anollés G.

Biochimie. 2018 Jun;149:135-136. doi: 10.1016/j.biochi.2018.04.001. Epub 2018 Apr 7.


Asgard archaea do not close the debate about the universal tree of life topology.

Da Cunha V, Gaia M, Nasir A, Forterre P.

PLoS Genet. 2018 Mar 29;14(3):e1007215. doi: 10.1371/journal.pgen.1007215. eCollection 2018 Mar. No abstract available.


Do Viruses Exchange Genes across Superkingdoms of Life?

Malik SS, Azem-E-Zahra S, Kim KM, Caetano-Anollés G, Nasir A.

Front Microbiol. 2017 Oct 31;8:2110. doi: 10.3389/fmicb.2017.02110. eCollection 2017.


A Preliminary List of Horizontally Transferred Genes in Prokaryotes Determined by Tree Reconstruction and Reconciliation.

Jeong H, Nasir A.

Front Genet. 2017 Aug 28;8:112. doi: 10.3389/fgene.2017.00112. eCollection 2017.


Phylogenetic Tracings of Proteome Size Support the Gradual Accretion of Protein Structural Domains and the Early Origin of Viruses from Primordial Cells.

Nasir A, Kim KM, Caetano-Anollés G.

Front Microbiol. 2017 Jun 23;8:1178. doi: 10.3389/fmicb.2017.01178. eCollection 2017.


Long-term evolution of viruses: A Janus-faced balance.

Nasir A, Kim KM, Caetano-Anollés G.

Bioessays. 2017 Aug;39(8). doi: 10.1002/bies.201700026. Epub 2017 Jun 16. Review.


Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes.

Da Cunha V, Gaia M, Gadelle D, Nasir A, Forterre P.

PLoS Genet. 2017 Jun 12;13(6):e1006810. doi: 10.1371/journal.pgen.1006810. eCollection 2017 Jun.


Complete genome of a metabolically-diverse marine bacterium Shewanella japonica KCTC 22435T.

Kim KM, Choe H, Kim BK, Nasir A.

Mar Genomics. 2017 Oct;35:39-42. doi: 10.1016/j.margen.2017.05.004. Epub 2017 May 15.


Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification.

Nasir A, Caetano-Anollés G.

Front Microbiol. 2017 Mar 10;8:380. doi: 10.3389/fmicb.2017.00380. eCollection 2017.


Arguments Reinforcing the Three-Domain View of Diversified Cellular Life.

Nasir A, Kim KM, Da Cunha V, Caetano-Anollés G.

Archaea. 2016 Dec 5;2016:1851865. doi: 10.1155/2016/1851865. eCollection 2016. Review.


Complete Genome Sequence of Nitrilotriacetate-Degrading Aminobacter aminovorans KCTC 2477T.

Lee SH, Choe H, Nasir A, Park DS, Kim KM.

Genome Announc. 2016 Dec 8;4(6). pii: e01363-16. doi: 10.1128/genomeA.01363-16.


CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment.

Oh J, Choi CH, Park MK, Kim BK, Hwang K, Lee SH, Hong SG, Nasir A, Cho WS, Kim KM.

PLoS One. 2016 Mar 8;11(3):e0151064. doi: 10.1371/journal.pone.0151064. eCollection 2016.


Complete genome of biodegradable plastics-decomposing Roseateles depolymerans KCTC 42856(T) (=61A(T)).

Lee SH, Choe H, Kim SG, Park DS, Nasir A, Kim BK, Kim KM.

J Biotechnol. 2016 Feb 20;220:47-8. doi: 10.1016/j.jbiotec.2016.01.012. Epub 2016 Jan 16.


Complete genome of brown algal polysaccharides-degrading Pseudoalteromonas issachenkonii KCTC 12958(T) (=KMM 3549(T)).

Lee SH, Choe H, Kim SG, Park DS, Nasir A, Kim BK, Kim KM.

J Biotechnol. 2016 Feb 10;219:86-7. doi: 10.1016/j.jbiotec.2015.12.031. Epub 2015 Dec 28.


Complete genome of Streptomyces hygroscopicus subsp. limoneus KCTC 1717 (=KCCM 11405), a soil bacterium producing validamycin and diverse secondary metabolites.

Lee SH, Choe H, Bae KS, Park DS, Nasir A, Kim KM.

J Biotechnol. 2016 Feb 10;219:1-2. doi: 10.1016/j.jbiotec.2015.12.010. Epub 2015 Dec 15.


Complete genome of Pseudoalteromonas phenolica KCTC 12086(T) (= O-BC30(T)), a marine bacterium producing polybrominated aromatic compounds.

Choe H, Lee SH, Kim SG, Park DS, Nasir A, Kim KM.

J Biotechnol. 2016 Jan 20;218:23-4. doi: 10.1016/j.jbiotec.2015.11.028. Epub 2015 Dec 2.


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