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Items: 1 to 20 of 21

1.

Rootstock effects on scion phenotypes in a 'Chambourcin' experimental vineyard.

Migicovsky Z, Harris ZN, Klein LL, Li M, McDermaid A, Chitwood DH, Fennell A, Kovacs LG, Kwasniewski M, Londo JP, Ma Q, Miller AJ.

Hortic Res. 2019 May 1;6:64. doi: 10.1038/s41438-019-0146-2. eCollection 2019.

2.

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.

Monier B, McDermaid A, Wang C, Zhao J, Miller A, Fennell A, Ma Q.

PLoS Comput Biol. 2019 Feb 14;15(2):e1006792. doi: 10.1371/journal.pcbi.1006792. eCollection 2019 Feb.

3.

Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.).

Khadka VS, Vaughn K, Xie J, Swaminathan P, Ma Q, Cramer GR, Fennell AY.

BMC Plant Biol. 2019 Feb 13;19(1):72. doi: 10.1186/s12870-019-1664-7.

4.

Evaluation of Volatile Metabolites Emitted In-Vivo from Cold-Hardy Grapes during Ripening Using SPME and GC-MS: A Proof-of-Concept.

Rice S, Maurer DL, Fennell A, Dharmadhikari M, Koziel JA.

Molecules. 2019 Feb 1;24(3). pii: E536. doi: 10.3390/molecules24030536.

5.

Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (Helianthus annuus L.).

Neupane S, Schweitzer SE, Neupane A, Andersen EJ, Fennell A, Zhou R, Nepal MP.

Plants (Basel). 2019 Jan 22;8(2). pii: E28. doi: 10.3390/plants8020028.

6.

Effects of Harvest Time on the Aroma of White Wines Made from Cold-Hardy Brianna and Frontenac Gris Grapes Using Headspace Solid-Phase Microextraction and Gas Chromatography-Mass Spectrometry-Olfactometry.

Rice S, Tursumbayeva M, Clark M, Greenlee D, Dharmadhikari M, Fennell A, Koziel JA.

Foods. 2019 Jan 16;8(1). pii: E29. doi: 10.3390/foods8010029.

7.

Shotgun proteomic analysis of photoperiod regulated dormancy induction in grapevine.

George IS, Fennell AY, Haynes PA.

J Proteomics. 2018 Sep 15;187:13-24. doi: 10.1016/j.jprot.2018.05.014. Epub 2018 May 29.

PMID:
29857064
8.

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.

Xie J, Ma A, Fennell A, Ma Q, Zhao J.

Brief Bioinform. 2018 Feb 27. doi: 10.1093/bib/bby014. [Epub ahead of print]

PMID:
29490019
9.

Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly.

Patel S, Lu Z, Jin X, Swaminathan P, Zeng E, Fennell AY.

BMC Genomics. 2018 Jan 17;19(1):57. doi: 10.1186/s12864-018-4434-2.

10.

QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.

Zhang Y, Xie J, Yang J, Fennell A, Zhang C, Ma Q.

Bioinformatics. 2017 Feb 1;33(3):450-452. doi: 10.1093/bioinformatics/btw635.

PMID:
28172469
11.

An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.

Liu B, Zhang H, Zhou C, Li G, Fennell A, Wang G, Kang Y, Liu Q, Ma Q.

BMC Genomics. 2016 Aug 9;17:578. doi: 10.1186/s12864-016-2982-x.

12.

A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine.

Yang S, Fresnedo-Ramírez J, Wang M, Cote L, Schweitzer P, Barba P, Takacs EM, Clark M, Luby J, Manns DC, Sacks G, Mansfield AK, Londo J, Fennell A, Gadoury D, Reisch B, Cadle-Davidson L, Sun Q.

Hortic Res. 2016 Feb 17;3:16002. doi: 10.1038/hortres.2016.2. eCollection 2016.

13.

Next Generation Mapping of Enological Traits in an F2 Interspecific Grapevine Hybrid Family.

Yang S, Fresnedo-Ramírez J, Sun Q, Manns DC, Sacks GL, Mansfield AK, Luby JJ, Londo JP, Reisch BI, Cadle-Davidson LE, Fennell AY.

PLoS One. 2016 Mar 14;11(3):e0149560. doi: 10.1371/journal.pone.0149560. eCollection 2016.

14.

Short day transcriptomic programming during induction of dormancy in grapevine.

Fennell AY, Schlauch KA, Gouthu S, Deluc LG, Khadka V, Sreekantan L, Grimplet J, Cramer GR, Mathiason KL.

Front Plant Sci. 2015 Nov 4;6:834. doi: 10.3389/fpls.2015.00834. eCollection 2015.

15.

Protein identification and quantification from riverbank grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis.

George IS, Fennell AY, Haynes PA.

Proteomics. 2015 Sep;15(17):3061-5. doi: 10.1002/pmic.201500085. Epub 2015 Jun 22.

PMID:
25929842
16.

Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences.

Grimplet J, Van Hemert J, Carbonell-Bejerano P, Díaz-Riquelme J, Dickerson J, Fennell A, Pezzotti M, Martínez-Zapater JM.

BMC Res Notes. 2012 May 3;5:213. doi: 10.1186/1756-0500-5-213.

17.

Auxin and cytokinin related gene expression during active shoot growth and latent bud paradormancy in Vitis riparia grapevine.

He D, Mathiason K, Fennell A.

J Plant Physiol. 2012 Apr 15;169(6):643-8. doi: 10.1016/j.jplph.2012.01.001. Epub 2012 Feb 8.

PMID:
22321693
18.

Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines.

Victor KJ, Fennell AY, Grimplet J.

Proteome Sci. 2010 Aug 12;8:44. doi: 10.1186/1477-5956-8-44.

19.

Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning.

Sreekantan L, Mathiason K, Grimplet J, Schlauch K, Dickerson JA, Fennell AY.

Plant Mol Biol. 2010 May;73(1-2):191-205. doi: 10.1007/s11103-010-9611-x. Epub 2010 Feb 12.

PMID:
20151315
20.

VitisNet: "Omics" integration through grapevine molecular networks.

Grimplet J, Cramer GR, Dickerson JA, Mathiason K, Van Hemert J, Fennell AY.

PLoS One. 2009 Dec 21;4(12):e8365. doi: 10.1371/journal.pone.0008365.

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