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Items: 1 to 20 of 91

1.

Opposite Modulation of RAC1 by Mutations in TRIO Is Associated with Distinct, Domain-Specific Neurodevelopmental Disorders.

Barbosa S, Greville-Heygate S, Bonnet M, Godwin A, Fagotto-Kaufmann C, Kajava AV, Laouteouet D, Mawby R, Wai HA, Dingemans AJM, Hehir-Kwa J, Willems M, Capri Y, Mehta SG, Cox H, Goudie D, Vansenne F, Turnpenny P, Vincent M, Cogné B, Lesca G, Hertecant J, Rodriguez D, Keren B, Burglen L, Gérard M, Putoux A; C4RCD Research Group, Cantagrel V, Siquier-Pernet K, Rio M, Banka S, Sarkar A, Steeves M, Parker M, Clement E, Moutton S, Tran Mau-Them F, Piton A, de Vries BBA, Guille M, Debant A, Schmidt S, Baralle D.

Am J Hum Genet. 2020 Mar 5;106(3):338-355. doi: 10.1016/j.ajhg.2020.01.018. Epub 2020 Feb 27.

2.

Tally-2.0: upgraded validator of tandem repeat detection in protein sequences.

Perovic V, Leclercq JY, Sumonja N, Richard FD, Veljkovic N, Kajava AV.

Bioinformatics. 2020 Feb 25. pii: btaa121. doi: 10.1093/bioinformatics/btaa121. [Epub ahead of print]

PMID:
32096820
3.

Census of halide binding sites in protein structures.

Skitchenko RK, Usoltsev D, Uspenskaya M, Kajava AV, Guskov A.

Bioinformatics. 2020 Feb 5. pii: btaa079. doi: 10.1093/bioinformatics/btaa079. [Epub ahead of print]

PMID:
32022861
4.

Design of a New [PSI +]-No-More Mutation in SUP35 With Strong Inhibitory Effect on the [PSI +] Prion Propagation.

Danilov LG, Matveenko AG, Ryzhkova VE, Belousov MV, Poleshchuk OI, Likholetova DV, Sokolov PA, Kasyanenko NA, Kajava AV, Zhouravleva GA, Bondarev SA.

Front Mol Neurosci. 2019 Nov 19;12:274. doi: 10.3389/fnmol.2019.00274. eCollection 2019.

5.

DisProt: intrinsic protein disorder annotation in 2020.

Hatos A, Hajdu-Soltész B, Monzon AM, Palopoli N, Álvarez L, Aykac-Fas B, Bassot C, Benítez GI, Bevilacqua M, Chasapi A, Chemes L, Davey NE, Davidović R, Dunker AK, Elofsson A, Gobeill J, Foutel NSG, Sudha G, Guharoy M, Horvath T, Iglesias V, Kajava AV, Kovacs OP, Lamb J, Lambrughi M, Lazar T, Leclercq JY, Leonardi E, Macedo-Ribeiro S, Macossay-Castillo M, Maiani E, Manso JA, Marino-Buslje C, Martínez-Pérez E, Mészáros B, Mičetić I, Minervini G, Murvai N, Necci M, Ouzounis CA, Pajkos M, Paladin L, Pancsa R, Papaleo E, Parisi G, Pasche E, Barbosa Pereira PJ, Promponas VJ, Pujols J, Quaglia F, Ruch P, Salvatore M, Schad E, Szabo B, Szaniszló T, Tamana S, Tantos A, Veljkovic N, Ventura S, Vranken W, Dosztányi Z, Tompa P, Tosatto SCE, Piovesan D.

Nucleic Acids Res. 2020 Jan 8;48(D1):D269-D276. doi: 10.1093/nar/gkz975.

PMID:
31713636
6.

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.

Tørresen OK, Star B, Mier P, Andrade-Navarro MA, Bateman A, Jarnot P, Gruca A, Grynberg M, Kajava AV, Promponas VJ, Anisimova M, Jakobsen KS, Linke D.

Nucleic Acids Res. 2019 Dec 2;47(21):10994-11006. doi: 10.1093/nar/gkz841.

7.

Prion soft amyloid core driven self-assembly of globular proteins into bioactive nanofibrils.

Wang W, Navarro S, Azizyan RA, Baño-Polo M, Esperante SA, Kajava AV, Ventura S.

Nanoscale. 2019 Jul 14;11(26):12680-12694. doi: 10.1039/c9nr01755k. Epub 2019 Jun 25.

PMID:
31237592
8.

The HslV Protease from Leishmania major and Its Activation by C-terminal HslU Peptides.

Kebe NM, Samanta K, Singh P, Lai-Kee-Him J, Apicella V, Payrot N, Lauraire N, Legrand B, Lisowski V, Mbang-Benet DE, Pages M, Bastien P, Kajava AV, Bron P, Hernandez JF, Coux O.

Int J Mol Sci. 2019 Feb 26;20(5). pii: E1021. doi: 10.3390/ijms20051021.

9.

Disentangling the complexity of low complexity proteins.

Mier P, Paladin L, Tamana S, Petrosian S, Hajdu-Soltész B, Urbanek A, Gruca A, Plewczynski D, Grynberg M, Bernadó P, Gáspári Z, Ouzounis CA, Promponas VJ, Kajava AV, Hancock JM, Tosatto SCE, Dosztanyi Z, Andrade-Navarro MA.

Brief Bioinform. 2019 Jan 30. doi: 10.1093/bib/bbz007. [Epub ahead of print]

PMID:
30698641
10.

Post-Translational Modifications and Diastolic Calcium Leak Associated to the Novel RyR2-D3638A Mutation Lead to CPVT in Patient-Specific hiPSC-Derived Cardiomyocytes.

Acimovic I, Refaat MM, Moreau A, Salykin A, Reiken S, Sleiman Y, Souidi M, Přibyl J, Kajava AV, Richard S, Lu JT, Chevalier P, Skládal P, Dvořak P, Rotrekl V, Marks AR, Scheinman MM, Lacampagne A, Meli AC.

J Clin Med. 2018 Nov 8;7(11). pii: E423. doi: 10.3390/jcm7110423.

11.

Porins and Amyloids are Coded by Similar Sequence Motifs.

Villain E, Nikekhin AA, Kajava AV.

Proteomics. 2019 Mar;19(6):e1800075. doi: 10.1002/pmic.201800075. Epub 2018 Nov 30.

PMID:
30358094
12.

Protein Co-Aggregation Related to Amyloids: Methods of Investigation, Diversity, and Classification.

Bondarev SA, Antonets KS, Kajava AV, Nizhnikov AA, Zhouravleva GA.

Int J Mol Sci. 2018 Aug 4;19(8). pii: E2292. doi: 10.3390/ijms19082292. Review.

13.

Establishment of Constraints on Amyloid Formation Imposed by Steric Exclusion of Globular Domains.

Azizyan RA, Garro A, Radkova Z, Anikeenko A, Bakulina A, Dumas C, Kajava AV.

J Mol Biol. 2018 Oct 12;430(20):3835-3846. doi: 10.1016/j.jmb.2018.05.038. Epub 2018 Jun 1.

PMID:
29860028
14.

BetaSerpentine: a bioinformatics tool for reconstruction of amyloid structures.

Bondarev SA, Bondareva OV, Zhouravleva GA, Kajava AV.

Bioinformatics. 2018 Feb 15;34(4):599-608. doi: 10.1093/bioinformatics/btx629.

PMID:
29444233
15.

Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger.

Rojas-Lopez M, Zorgani MA, Kelley LA, Bailly X, Kajava AV, Henderson IR, Polticelli F, Pizza M, Rosini R, Desvaux M.

Front Microbiol. 2018 Jan 5;8:2607. doi: 10.3389/fmicb.2017.02607. eCollection 2017.

16.

Editorial for special issue "Proteins with tandem repeats: sequences, structures and functions"☆.

Kajava AV, Tosatto SCE.

J Struct Biol. 2018 Feb;201(2):86-87. doi: 10.1016/j.jsb.2017.12.011. Epub 2017 Dec 30. No abstract available.

PMID:
29294402
17.

Classification of β-hairpin repeat proteins.

Roche DB, Viet PD, Bakulina A, Hirsh L, Tosatto SCE, Kajava AV.

J Struct Biol. 2018 Feb;201(2):130-138. doi: 10.1016/j.jsb.2017.10.001. Epub 2017 Oct 7.

PMID:
29017817
18.

Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms.

Roche DB, Villain E, Kajava AV.

Protein Sci. 2017 Sep;26(9):1864-1869. doi: 10.1002/pro.3225. Epub 2017 Jul 15.

19.

Corrigendum: DisProt 7.0: a major update of the database of disordered proteins.

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, Minervini G, Murvai N, Pujols J, Roche DB, Salladini E, Schad E, Schramm A, Szabo B, Tantos A, Tonello F, Tsirigos KD, Veljković N, Ventura S, Vranken W, Warholm P, Uversky VN, Dunker AK, Longhi S, Tompa P, Tosatto SC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1123-D1124. doi: 10.1093/nar/gkw1279. Epub 2016 Dec 13. No abstract available.

20.

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.

Paladin L, Hirsh L, Piovesan D, Andrade-Navarro MA, Kajava AV, Tosatto SCE.

Nucleic Acids Res. 2017 Apr 7;45(6):3613. doi: 10.1093/nar/gkw1268. No abstract available.

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