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Items: 1 to 20 of 149

1.

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Sep;164(9):2417-2429. doi: 10.1007/s00705-019-04306-w.

PMID:
31187277
2.

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.

Barylski J, Enault F, Dutilh BE, Schuller MBP, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM.

Syst Biol. 2019 May 25. pii: syz036. doi: 10.1093/sysbio/syz036. [Epub ahead of print]

PMID:
31127947
3.

Still Something to Discover: Novel Insights intoEscherichia coli Phage Diversity and Taxonomy.

Korf IHE, Meier-Kolthoff JP, Adriaenssens EM, Kropinski AM, Nimtz M, Rohde M, van Raaij MJ, Wittmann J.

Viruses. 2019 May 17;11(5). pii: E454. doi: 10.3390/v11050454.

4.

Complete genome sequence analysis of temperate Erwinia bacteriophages 49 and 59.

Zlatohurska M, Gorb T, Romaniuk L, Korol N, Faidiuk Y, Kropinski AM, Kushkina A, Tovkach F.

J Basic Microbiol. 2019 Jul;59(7):754-764. doi: 10.1002/jobm.201900205. Epub 2019 Jun 6.

PMID:
31099101
5.

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.

Bin Jang H, Bolduc B, Zablocki O, Kuhn JH, Roux S, Adriaenssens EM, Brister JR, Kropinski AM, Krupovic M, Lavigne R, Turner D, Sullivan MB.

Nat Biotechnol. 2019 Jun;37(6):632-639. doi: 10.1038/s41587-019-0100-8. Epub 2019 May 6.

6.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfaçon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Mar;164(3):943-946. doi: 10.1007/s00705-018-04136-2.

PMID:
30663020
7.

Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Calisher CH, Briese T, Brister JR, Charrel RN, Dürrwald R, Ebihara H, Fulhorst CF, Gāo GF, Groschup MH, Haddow AD, Hyndman TH, Junglen S, Klempa B, Klingström J, Kropinski AM, Krupovic M, LaBeaud AD, Maes P, Nowotny N, Nunes MRT, Payne SL, Radoshitzky SR, Rubbenstroth D, Sabanadzovic S, Sasaya T, Stenglein MD, Varsani A, Wahl V, Weaver SC, Zerbini FM, Vasilakis N, Kuhn JH.

Syst Biol. 2019 Sep 1;68(5):828-839. doi: 10.1093/sysbio/syy087.

PMID:
30597118
8.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
9.

Draft Genome Assembly of a Potentially Zoonotic Cryptosporidium parvum Isolate, UKP1.

Nash JHE, Robertson J, Elwin K, Chalmers RA, Kropinski AM, Guy RA.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01291-18. doi: 10.1128/MRA.01291-18. eCollection 2018 Nov.

10.

Two novel temperate bacteriophages infecting Streptococcus pyogenes: Their genomes, morphology and stability.

Harhala M, Barylski J, Humińska-Lisowska K, Lecion D, Wojciechowicz J, Lahutta K, Kuś M, Kropinski AM, Nowak S, Nowicki G, Hodyra-Stefaniak K, Dąbrowska K.

PLoS One. 2018 Oct 19;13(10):e0205995. doi: 10.1371/journal.pone.0205995. eCollection 2018.

11.

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.

Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P.

J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17.

12.

Bacteriophage research - What we have learnt and what still needs to be addressed.

Kropinski AM.

Res Microbiol. 2018 Nov;169(9):481-487. doi: 10.1016/j.resmic.2018.05.002. Epub 2018 May 16.

PMID:
29777837
13.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 Sep;163(9):2601-2631. doi: 10.1007/s00705-018-3847-1. Epub 2018 May 12.

PMID:
29754305
14.

Genomic analysis and immune response in a murine mastitis model of vB_EcoM-UFV13, a potential biocontrol agent for use in dairy cows.

da Silva Duarte V, Dias RS, Kropinski AM, Campanaro S, Treu L, Siqueira C, Vieira MS, da Silva Paes I, Santana GR, Martins F, Crispim JS, da Silva Xavier A, Ferro CG, Vidigal PMP, da Silva CC, de Paula SO.

Sci Rep. 2018 May 1;8(1):6845. doi: 10.1038/s41598-018-24896-w.

15.

Correction: Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.

Skowron PM, Kropinski AM, Zebrowska J, Janus L, Szemiako K, Czajkowska E, Maciejewska N, Skowron M, Łoś J, Łoś M, Zylicz-Stachula A.

PLoS One. 2018 Apr 26;13(4):e0196798. doi: 10.1371/journal.pone.0196798. eCollection 2018.

16.

The Sequence of Two Bacteriophages with Hypermodified Bases Reveals Novel Phage-Host Interactions.

Kropinski AM, Turner D, Nash JHE, Ackermann HW, Lingohr EJ, Warren RA, Ehrlich KC, Ehrlich M.

Viruses. 2018 Apr 24;10(5). pii: E217. doi: 10.3390/v10050217.

17.

A T4virus prevents biofilm formation by Trueperella pyogenes.

da Silva Duarte V, Dias RS, Kropinski AM, da Silva Xavier A, Ferro CG, Vidigal PMP, da Silva CC, de Paula SO.

Vet Microbiol. 2018 May;218:45-51. doi: 10.1016/j.vetmic.2018.03.025. Epub 2018 Mar 22.

PMID:
29685220
18.

Prevalence of fecal viruses and bacteriophage in Canadian farmed mink (Neovison vison).

Xie XT, Kropinski AM, Tapscott B, Weese JS, Turner PV.

Microbiologyopen. 2019 Jan;8(1):e00622. doi: 10.1002/mbo3.622. Epub 2018 Apr 10.

19.

Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.

Skowron PM, Kropinski AM, Zebrowska J, Janus L, Szemiako K, Czajkowska E, Maciejewska N, Skowron M, Łoś J, Łoś M, Zylicz-Stachula A.

PLoS One. 2018 Apr 6;13(4):e0195449. doi: 10.1371/journal.pone.0195449. eCollection 2018. Erratum in: PLoS One. 2018 Apr 26;13(4):e0196798.

20.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990

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