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Items: 1 to 20 of 386

1.

Linkage disequilibrium maps for European and African populations constructed from whole genome sequence data.

Vergara-Lope A, Jabalameli MR, Horscroft C, Ennis S, Collins A, Pengelly RJ.

Sci Data. 2019 Oct 17;6(1):208. doi: 10.1038/s41597-019-0227-y.

2.

Complete Genome Sequence of Strain PM004, a Novel Cultured Member of the Human Oral Microbiome from the Candidate Phylum Saccharibacteria (TM7).

Murugkar PP, Collins AJ, Dewhirst FE.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e01159-19. doi: 10.1128/MRA.01159-19.

3.

Complete Genome Sequence of Strain AC001, a Novel Cultured Member of the Human Oral Microbiome from the Candidate Phylum Saccharibacteria (TM7).

Collins AJ, Murugkar PP, Dewhirst FE.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e01158-19. doi: 10.1128/MRA.01158-19.

4.

VDJbase: an adaptive immune receptor genotype and haplotype database.

Omer A, Shemesh O, Peres A, Polak P, Shepherd AJ, Watson CT, Boyd SD, Collins AM, Lees W, Yaari G.

Nucleic Acids Res. 2019 Oct 11. pii: gkz872. doi: 10.1093/nar/gkz872. [Epub ahead of print]

PMID:
31602484
5.

Gene-dense autosomal chromosomes show evidence for increased selection.

Jabalameli MR, Horscroft C, Vergara-Lope A, Pengelly RJ, Collins A.

Heredity (Edinb). 2019 Dec;123(6):774-783. doi: 10.1038/s41437-019-0272-5. Epub 2019 Oct 1.

PMID:
31576017
6.

OGRDB: a reference database of inferred immune receptor genes.

Lees W, Busse CE, Corcoran M, Ohlin M, Scheepers C, Matsen FA, Yaari G, Watson CT; AIRR Community, Collins A, Shepherd AJ.

Nucleic Acids Res. 2019 Sep 30. pii: gkz822. doi: 10.1093/nar/gkz822. [Epub ahead of print]

PMID:
31566225
7.

Introduction to hCOMET special issue, 'Comet assay in vitro'.

Dusinska M, Costa S, Collins A.

Mutat Res. 2019 Sep;845:403071. doi: 10.1016/j.mrgentox.2019.07.001. Epub 2019 Jul 3. No abstract available.

PMID:
31561893
8.

A comparison of immunoglobulin IGHV, IGHD and IGHJ genes in wild-derived and classical inbred mouse strains.

Watson CT, Kos JT, Gibson WS, Newman L, Deikus G, Busse CE, Smith ML, Jackson KJ, Collins AM.

Immunol Cell Biol. 2019 Nov;97(10):888-901. doi: 10.1111/imcb.12288. Epub 2019 Oct 6.

PMID:
31441114
9.

Clinical significance of DNA methylation in chronic lymphocytic leukemia patients: results from 3 UK clinical trials.

Wojdacz TK, Amarasinghe HE, Kadalayil L, Beattie A, Forster J, Blakemore SJ, Parker H, Bryant D, Larrayoz M, Clifford R, Robbe P, Davis ZA, Else M, Howard DR, Stamatopoulos B, Steele AJ, Rosenquist R, Collins A, Pettitt AR, Hillmen P, Plass C, Schuh A, Catovsky D, Oscier DG, Rose-Zerilli MJJ, Oakes CC, Strefford JC.

Blood Adv. 2019 Aug 27;3(16):2474-2481. doi: 10.1182/bloodadvances.2019000237.

10.

Technical recommendations to perform the alkaline standard and enzyme-modified comet assay in human biomonitoring studies.

Azqueta A, Muruzabal D, Boutet-Robinet E, Milic M, Dusinska M, Brunborg G, Møller P, Collins AR.

Mutat Res. 2019 Jul;843:24-32. doi: 10.1016/j.mrgentox.2019.04.007. Epub 2019 May 1.

PMID:
31421734
11.

Isolation of leukocytes from frozen buffy coat for comet assay analysis of DNA damage.

Bøhn SK, Vebraite V, Shaposhnikov S, Collins AR.

Mutat Res. 2019 Jul;843:18-23. doi: 10.1016/j.mrgentox.2019.03.010. Epub 2019 Mar 31.

PMID:
31421733
12.

The comet assay in human biomonitoring: Technical and epidemiological perspectives.

Collins A, Milic M, Bonassi S, Dusinska M.

Mutat Res. 2019 Jul;843:1-2. doi: 10.1016/j.mrgentox.2019.06.002. Epub 2019 Jun 8. No abstract available.

PMID:
31421730
13.

DNA repair as a human biomonitoring tool: Comet assay approaches.

Azqueta A, Langie SAS, Boutet-Robinet E, Duthie S, Ladeira C, Møller P, Collins AR, Godschalk RWL; Working Group 5 of the hCOMET project (CA15132).

Mutat Res. 2019 Jul - Sep;781:71-87. doi: 10.1016/j.mrrev.2019.03.002. Epub 2019 Mar 6. Review.

PMID:
31416580
14.

The comet assay in animal models: From bugs to whales - (Part 2 Vertebrates).

Gajski G, Žegura B, Ladeira C, Novak M, Sramkova M, Pourrut B, Del Bo' C, Milić M, Gutzkow KB, Costa S, Dusinska M, Brunborg G, Collins A.

Mutat Res. 2019 Jul - Sep;781:130-164. doi: 10.1016/j.mrrev.2019.04.002. Epub 2019 Apr 20. Review.

PMID:
31416573
15.

Measurement of DNA damage with the comet assay in high-prevalence diseases: current status and future directions.

Møller P, Stopper H, Collins AR.

Mutagenesis. 2019 Jul 11. pii: gez018. doi: 10.1093/mutage/gez018. [Epub ahead of print]

PMID:
31294794
16.

Reconstruction of the Damaged Dorsal Root Entry Zone by Transplantation of Olfactory Ensheathing Cells.

Collins A, Ibrahim A, Li D, Liadi M, Li Y.

Cell Transplant. 2019 Sep-Oct;28(9-10):1212-1219. doi: 10.1177/0963689719855938. Epub 2019 Jul 4.

17.

Environmental Assessment and Evaluation of Oxidative Stress and Genotoxicity Biomarkers Related to Chronic Occupational Exposure to Benzene.

Costa-Amaral IC, Carvalho LVB, Santos MVC, Valente D, Pereira AC, Figueiredo VO, Souza JM, Castro VS, Trancoso MF, Fonseca ASA, Milagres VG, Mendes MPR, Paiva MJN, André LC, Borges RM, Menezes MAC, Alves SR, Gonçalves ES, Sisenando HA, Perini JA, Oliveira MS, Moura-Correa MJ, Teixeira LR, Collins AR, Mattos RCOC, Sarcinelli PN, Larentis AL.

Int J Environ Res Public Health. 2019 Jun 25;16(12). pii: E2240. doi: 10.3390/ijerph16122240.

18.

The comet assay in animal models: From bugs to whales - (Part 1 Invertebrates).

Gajski G, Žegura B, Ladeira C, Pourrut B, Del Bo' C, Novak M, Sramkova M, Milić M, Gutzkow KB, Costa S, Dusinska M, Brunborg G, Collins A.

Mutat Res. 2019 Jan - Mar;779:82-113. doi: 10.1016/j.mrrev.2019.02.003. Epub 2019 Feb 16. Review.

PMID:
31097154
19.

Proteomics Standards Initiative Extended FASTA Format.

Binz PA, Shofstahl J, Vizcaíno JA, Barsnes H, Chalkley RJ, Menschaert G, Alpi E, Clauser K, Eng JK, Lane L, Seymour SL, Sánchez LFH, Mayer G, Eisenacher M, Perez-Riverol Y, Kapp EA, Mendoza L, Baker PR, Collins A, Van Den Bossche T, Deutsch EW.

J Proteome Res. 2019 Jun 7;18(6):2686-2692. doi: 10.1021/acs.jproteome.9b00064. Epub 2019 May 23.

20.

Heterogeneity in the extent of linkage disequilibrium among exonic, intronic, non-coding RNA and intergenic chromosome regions.

Vergara-Lope A, Ennis S, Vorechovsky I, Pengelly RJ, Collins A.

Eur J Hum Genet. 2019 Sep;27(9):1436-1444. doi: 10.1038/s41431-019-0419-0. Epub 2019 May 3.

PMID:
31053778

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