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Items: 1 to 20 of 121

1.

The effect of obstacles in multi-site protein target search with DNA looping.

Felipe C, Shin J, Loginova Y, Kolomeisky AB.

J Chem Phys. 2020 Jan 14;152(2):025101. doi: 10.1063/1.5135917.

PMID:
31941320
2.

Molecular Model for the Surface-Catalyzed Protein Self-Assembly.

Pan Y, Banerjee S, Zagorski K, Shlyakhtenko LS, Kolomeisky AB, Lyubchenko YL.

J Phys Chem B. 2020 Jan 16;124(2):366-372. doi: 10.1021/acs.jpcb.9b10052. Epub 2020 Jan 7.

PMID:
31867969
3.

Elucidating the correlations between cancer initiation times and lifetime cancer risks.

Teimouri H, Kochugaeva MP, Kolomeisky AB.

Sci Rep. 2019 Dec 12;9(1):18940. doi: 10.1038/s41598-019-55300-w.

4.

Role of Intrinsically Disordered Regions in Acceleration of Protein-Protein Association.

Misiura MM, Kolomeisky AB.

J Phys Chem B. 2020 Jan 9;124(1):20-27. doi: 10.1021/acs.jpcb.9b08793. Epub 2019 Dec 19.

PMID:
31804089
5.

Target search on DNA by interacting molecules: First-passage approach.

Shin J, Kolomeisky AB.

J Chem Phys. 2019 Sep 28;151(12):125101. doi: 10.1063/1.5123988.

PMID:
31575173
6.

Theoretical Analysis of Run Length Distributions for Coupled Motor Proteins.

Wang Q, Kolomeisky AB.

J Phys Chem B. 2019 Jul 11;123(27):5805-5813. doi: 10.1021/acs.jpcb.9b04710. Epub 2019 Jun 27.

PMID:
31246472
7.

Facilitation of DNA loop formation by protein-DNA non-specific interactions.

Shin J, Kolomeisky AB.

Soft Matter. 2019 Jul 14;15(26):5255-5263. doi: 10.1039/c9sm00671k. Epub 2019 Jun 17.

PMID:
31204761
8.

Trade-Offs between Error, Speed, Noise, and Energy Dissipation in Biological Processes with Proofreading.

Mallory JD, Kolomeisky AB, Igoshin OA.

J Phys Chem B. 2019 Jun 6;123(22):4718-4725. doi: 10.1021/acs.jpcb.9b03757. Epub 2019 May 23.

PMID:
31074999
9.

Kinetic network model to explain gain-of-function mutations in ERK2 enzyme.

Misiura M, Kolomeisky AB.

J Chem Phys. 2019 Apr 21;150(15):155101. doi: 10.1063/1.5088647.

PMID:
31005085
10.

Theoretical insights into mechanisms of channel-facilitated molecular transport in the presence of stochastic gating.

Davtyan A, Kolomeisky AB.

J Chem Phys. 2019 Mar 28;150(12):124111. doi: 10.1063/1.5086224.

PMID:
30927881
11.

Theoretical investigation of stochastic clearance of bacteria: first-passage analysis.

Teimouri H, Kolomeisky AB.

J R Soc Interface. 2019 Mar 29;16(152):20180765. doi: 10.1098/rsif.2018.0765.

PMID:
30890051
12.

Anomalous Dense Liquid Condensates Host the Nucleation of Tumor Suppressor p53 Fibrils.

Safari MS, Wang Z, Tailor K, Kolomeisky AB, Conrad JC, Vekilov PG.

iScience. 2019 Feb 22;12:342-355. doi: 10.1016/j.isci.2019.01.027. Epub 2019 Jan 24.

13.

Theoretical Investigation of Transcriptional Bursting: A Multistate Approach.

Klindziuk A, Kolomeisky AB.

J Phys Chem B. 2018 Dec 20;122(50):11969-11977. doi: 10.1021/acs.jpcb.8b09676. Epub 2018 Dec 6.

PMID:
30481024
14.

Molecular search with conformational change: One-dimensional discrete-state stochastic model.

Shin J, Kolomeisky AB.

J Chem Phys. 2018 Nov 7;149(17):174104. doi: 10.1063/1.5051035.

PMID:
30409016
15.

Discrete-State Stochastic Modeling of Morphogen Gradient Formation.

Teimouri H, Kolomeisky AB.

Methods Mol Biol. 2018;1863:199-221. doi: 10.1007/978-1-4939-8772-6_12.

PMID:
30324600
16.

Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins.

Wang Q, Jana B, Diehl MR, Cheung MS, Kolomeisky AB, Onuchic JN.

Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):10052-10057. doi: 10.1073/pnas.1806688115. Epub 2018 Sep 17.

17.

Mechanisms of Protein Search for Targets on DNA: Theoretical Insights.

Shvets AA, Kochugaeva MP, Kolomeisky AB.

Molecules. 2018 Aug 22;23(9). pii: E2106. doi: 10.3390/molecules23092106.

18.

Correction to "Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins".

Misiura M, Wang Q, Cheung MS, Kolomeisky AB.

J Phys Chem B. 2018 Jul 26;122(29):7462. doi: 10.1021/acs.jpcb.8b06004. Epub 2018 Jul 11. No abstract available.

PMID:
29995413
19.

Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins.

Misiura M, Wang Q, Cheung MS, Kolomeisky AB.

J Phys Chem B. 2018 May 3;122(17):4653-4661. doi: 10.1021/acs.jpcb.8b00830. Epub 2018 Apr 23. Erratum in: J Phys Chem B. 2018 Jul 26;122(29):7462.

PMID:
29630822
20.

Physical-chemical mechanisms of pattern formation during gastrulation.

Bozorgui B, Kolomeisky AB, Teimouri H.

J Chem Phys. 2018 Mar 28;148(12):123302. doi: 10.1063/1.4993879.

PMID:
29604871

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