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Items: 11

1.

Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers.

Shome S, Parra RG, Fatima N, Monzon AM, Cuypers B, Moosa Y, Coimbra NDR, Assis J, Giner-Delgado C, Dönertaş HM, Cuesta-Astroz Y, Saarunya G, Allali I, Gupta S, Srivastava A, Kalsan M, Valdivia C, J Olguin-Orellana G, Papadimitriou S, Parisi D, Kristensen NP, Rib L, Guebila MB, Bauer E, Zaffaroni G, Bekkar A, Ashano E, Paladin L, Necci M, Moreyra NN, Rydén M, Villalobos-Solís J, Papadopoulos N, Rafael C, Karakulak T, Kaya Y, Gladbach Y, Dhanda SK, Šoštarić N, Alex A, DeBlasio D, Rahman F.

F1000Res. 2019 Sep 2;8. pii: ISCB Comm J-1574. doi: 10.12688/f1000research.20408.1. eCollection 2019.

2.

Identification and Analysis of Key Residues in Protein-RNA Complexes.

Kulandaisamy A, Srivastava A, Kumar P, Nagarajan R, Priya SB, Gromiha MM.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1436-1444. doi: 10.1109/TCBB.2018.2834387. Epub 2018 May 14.

PMID:
29993582
3.

Deciphering RNA-Recognition Patterns of Intrinsically Disordered Proteins.

Srivastava A, Ahmad S, Gromiha MM.

Int J Mol Sci. 2018 May 29;19(6). pii: E1595. doi: 10.3390/ijms19061595.

4.

Dissecting and analyzing key residues in protein-DNA complexes.

Kulandaisamy A, Srivastava A, Nagarajan R, Gromiha MM.

J Mol Recognit. 2018 Apr;31(4). doi: 10.1002/jmr.2692. Epub 2017 Dec 12.

PMID:
29230895
5.

Insights using the molecular model of Lipoxygenase from Finger millet (Eleusine coracana (L.)).

Tiwari A, Avashthi H, Jha R, Srivastava A, Kumar Garg V, Wasudev Ramteke P, Kumar A.

Bioinformation. 2016 Jun 15;12(3):156-164. doi: 10.6026/97320630012156. eCollection 2016.

6.

In silico analysis of 5'-UTRs highlights the prevalence of Shine-Dalgarno and leaderless-dependent mechanisms of translation initiation in bacteria and archaea, respectively.

Srivastava A, Gogoi P, Deka B, Goswami S, Kanaujia SP.

J Theor Biol. 2016 Aug 7;402:54-61. doi: 10.1016/j.jtbi.2016.05.005. Epub 2016 May 4.

PMID:
27155047
7.

Emergence of influenza A (H1N1)pdm09 genogroup 6B and drug resistant virus, India, January to May 2015.

Parida M, Dash PK, Kumar JS, Joshi G, Tandel K, Sharma S, Srivastava A, Agarwal A, Saha A, Saraswat S, Karothia D, Malviya V.

Euro Surveill. 2016;21(5):6-11. doi: 10.2807/1560-7917.ES.2016.21.5.30124.

8.

In silico analysis suggests that PH0702 and PH0208 encode for methylthioribose-1-phosphate isomerase and ribose-1,5-bisphosphate isomerase, respectively, rather than aIF2Bβ and aIF2Bδ.

Gogoi P, Srivastava A, Jayaprakash P, Jeyakanthan J, Kanaujia SP.

Gene. 2016 Jan 1;575(1):118-26. doi: 10.1016/j.gene.2015.08.048. Epub 2015 Aug 28.

PMID:
26318479
9.

Heterogeneous behavior of metalloproteins toward metal ion binding and selectivity: insights from molecular dynamics studies.

Gogoi P, Chandravanshi M, Mandal SK, Srivastava A, Kanaujia SP.

J Biomol Struct Dyn. 2016 Jul;34(7):1470-85. doi: 10.1080/07391102.2015.1080629. Epub 2015 Sep 2.

PMID:
26248730
10.

Expression, purification and evaluation of diagnostic potential and immunogenicity of dengue virus type 3 domain III protein.

Reddy PB, Pattnaik P, Tripathi NK, Srivastava A, Rao PV.

Protein Pept Lett. 2012 May;19(5):509-19.

PMID:
22486646
11.

Development and evaluation of a 1-step duplex reverse transcription polymerase chain reaction for differential diagnosis of chikungunya and dengue infection.

Dash PK, Parida M, Santhosh SR, Saxena P, Srivastava A, Neeraja M, Lakshmi V, Rao PV.

Diagn Microbiol Infect Dis. 2008 Sep;62(1):52-7. doi: 10.1016/j.diagmicrobio.2008.05.002. Epub 2008 Jun 25.

PMID:
18583086

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