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Items: 1 to 20 of 34

1.

The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch.

Boman J, Frankl-Vilches C, da Silva Dos Santos M, de Oliveira EHC, Gahr M, Suh A.

Genes (Basel). 2019 Apr 13;10(4). pii: E301. doi: 10.3390/genes10040301.

2.

Genome Size Evolution: Small Transposons with Large Consequences.

Suh A.

Curr Biol. 2019 Apr 1;29(7):R241-R243. doi: 10.1016/j.cub.2019.02.032.

PMID:
30939304
3.

Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds.

Xu L, Auer G, Peona V, Suh A, Deng Y, Feng S, Zhang G, Blom MPK, Christidis L, Prost S, Irestedt M, Zhou Q.

Nat Ecol Evol. 2019 May;3(5):834-844. doi: 10.1038/s41559-019-0850-1. Epub 2019 Apr 1.

PMID:
30936435
4.

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise.

Prost S, Armstrong EE, Nylander J, Thomas GWC, Suh A, Petersen B, Dalen L, Benz BW, Blom MPK, Palkopoulou E, Ericson PGP, Irestedt M.

Gigascience. 2019 May 1;8(5). pii: giz003. doi: 10.1093/gigascience/giz003.

5.

Parallel plumage colour evolution and introgressive hybridization in wheatears.

Schweizer M, Warmuth V, Alaei Kakhki N, Aliabadian M, Förschler M, Shirihai H, Suh A, Burri R.

J Evol Biol. 2019 Jan;32(1):100-110. doi: 10.1111/jeb.13401. Epub 2018 Nov 30.

PMID:
30421480
6.

How complete are "complete" genome assemblies?-An avian perspective.

Peona V, Weissensteiner MH, Suh A.

Mol Ecol Resour. 2018 Nov;18(6):1188-1195. doi: 10.1111/1755-0998.12933. Epub 2018 Aug 16.

PMID:
30035372
7.

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).

Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, T Domyan E, Suh A, Warren WC, Yandell M, Gilbert MTP, Shapiro MD.

G3 (Bethesda). 2018 May 4;8(5):1391-1398. doi: 10.1534/g3.117.300443.

8.

De-novo emergence of SINE retroposons during the early evolution of passerine birds.

Suh A, Bachg S, Donnellan S, Joseph L, Brosius J, Kriegs JO, Schmitz J.

Mob DNA. 2017 Dec 14;8:21. doi: 10.1186/s13100-017-0104-1. eCollection 2017.

9.

Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis).

Craig RJ, Suh A, Wang M, Ellegren H.

Mol Ecol. 2018 Jan;27(2):476-492. doi: 10.1111/mec.14462. Epub 2018 Jan 9.

PMID:
29226517
10.
11.

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies.

Talla V, Suh A, Kalsoom F, Dinca V, Vila R, Friberg M, Wiklund C, Backström N.

Genome Biol Evol. 2017 Oct 1;9(10):2491-2505. doi: 10.1093/gbe/evx163.

12.

Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses.

Lauber C, Seitz S, Mattei S, Suh A, Beck J, Herstein J, Börold J, Salzburger W, Kaderali L, Briggs JAG, Bartenschlager R.

Cell Host Microbe. 2017 Sep 13;22(3):387-399.e6. doi: 10.1016/j.chom.2017.07.019. Epub 2017 Aug 31.

13.

Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds.

Kawakami T, Mugal CF, Suh A, Nater A, Burri R, Smeds L, Ellegren H.

Mol Ecol. 2017 Aug;26(16):4158-4172. doi: 10.1111/mec.14197. Epub 2017 Jul 5.

PMID:
28597534
14.

Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications.

Weissensteiner MH, Pang AWC, Bunikis I, Höijer I, Vinnere-Petterson O, Suh A, Wolf JBW.

Genome Res. 2017 May;27(5):697-708. doi: 10.1101/gr.215095.116. Epub 2017 Mar 30.

15.

Dynamics of genome size evolution in birds and mammals.

Kapusta A, Suh A, Feschotte C.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1460-E1469. doi: 10.1073/pnas.1616702114. Epub 2017 Feb 8.

16.

Evolution and Diversity of Transposable Elements in Vertebrate Genomes.

Sotero-Caio CG, Platt RN 2nd, Suh A, Ray DA.

Genome Biol Evol. 2017 Jan 1;9(1):161-177. doi: 10.1093/gbe/evw264. Review.

17.

Evolution of bird genomes-a transposon's-eye view.

Kapusta A, Suh A.

Ann N Y Acad Sci. 2017 Feb;1389(1):164-185. doi: 10.1111/nyas.13295. Epub 2016 Dec 20. Review.

PMID:
27997700
18.

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex.

Vijay N, Bossu CM, Poelstra JW, Weissensteiner MH, Suh A, Kryukov AP, Wolf JB.

Nat Commun. 2016 Oct 31;7:13195. doi: 10.1038/ncomms13195.

19.

Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes.

Suh A, Witt CC, Menger J, Sadanandan KR, Podsiadlowski L, Gerth M, Weigert A, McGuire JA, Mudge J, Edwards SV, Rheindt FE.

Nat Commun. 2016 Apr 21;7:11396. doi: 10.1038/ncomms11396.

20.

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers.

Burri R, Nater A, Kawakami T, Mugal CF, Olason PI, Smeds L, Suh A, Dutoit L, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, Sætre GP, Török J, Ellegren H.

Genome Res. 2015 Nov;25(11):1656-65. doi: 10.1101/gr.196485.115. Epub 2015 Sep 9.

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