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Items: 7

1.

Molecular Dynamics Simulations Suggest a Non-Doublet Decoding Model of -1 Frameshifting by tRNASer3.

Caulfield T, Coban M, Tek A, Flores SC.

Biomolecules. 2019 Nov 18;9(11). pii: E745. doi: 10.3390/biom9110745.

2.

MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory.

Tek A, Korostelev AA, Flores SC.

Nucleic Acids Res. 2016 Jan 8;44(1):95-105. doi: 10.1093/nar/gkv1457. Epub 2015 Dec 15.

3.

The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems.

Sterpone F, Melchionna S, Tuffery P, Pasquali S, Mousseau N, Cragnolini T, Chebaro Y, St-Pierre JF, Kalimeri M, Barducci A, Laurin Y, Tek A, Baaden M, Nguyen PH, Derreumaux P.

Chem Soc Rev. 2014 Jul 7;43(13):4871-93. doi: 10.1039/c4cs00048j. Epub 2014 Apr 23. Review.

4.

Formation of raft-like assemblies within clusters of influenza hemagglutinin observed by MD simulations.

Parton DL, Tek A, Baaden M, Sansom MS.

PLoS Comput Biol. 2013 Apr;9(4):e1003034. doi: 10.1371/journal.pcbi.1003034. Epub 2013 Apr 11.

5.

Game on, science - how video game technology may help biologists tackle visualization challenges.

Lv Z, Tek A, Da Silva F, Empereur-mot C, Chavent M, Baaden M.

PLoS One. 2013;8(3):e57990. doi: 10.1371/journal.pone.0057990. Epub 2013 Mar 6.

6.

Mixing Atomistic and Coarse Grain Solvation Models for MD Simulations: Let WT4 Handle the Bulk.

Darré L, Tek A, Baaden M, Pantano S.

J Chem Theory Comput. 2012 Oct 9;8(10):3880-94. doi: 10.1021/ct3001816. Epub 2012 Jun 15.

PMID:
26593029
7.

GPU-accelerated atom and dynamic bond visualization using hyperballs: a unified algorithm for balls, sticks, and hyperboloids.

Chavent M, Vanel A, Tek A, Levy B, Robert S, Raffin B, Baaden M.

J Comput Chem. 2011 Oct;32(13):2924-35. doi: 10.1002/jcc.21861. Epub 2011 Jul 7.

PMID:
21735559

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