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Items: 1 to 20 of 41

1.

Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database.

Takii T, Seki K, Wakabayashi Y, Morishige Y, Sekizuka T, Yamashita A, Kato K, Uchimura K, Ohkado A, Keicho N, Mitarai S, Kuroda M, Kato S.

Sci Rep. 2019 Sep 6;9(1):12823. doi: 10.1038/s41598-019-49219-5.

2.

Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.

Iwamoto T, Murase Y, Yoshida S, Aono A, Kuroda M, Sekizuka T, Yamashita A, Kato K, Takii T, Arikawa K, Kato S, Mitarai S.

PLoS One. 2019 Feb 28;14(2):e0212798. doi: 10.1371/journal.pone.0212798. eCollection 2019.

3.

Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria.

Ito T, Sekizuka T, Kishi N, Yamashita A, Kuroda M.

Gut Microbes. 2019;10(1):77-91. doi: 10.1080/19490976.2018.1491265. Epub 2018 Aug 17.

4.

The habu genome reveals accelerated evolution of venom protein genes.

Shibata H, Chijiwa T, Oda-Ueda N, Nakamura H, Yamaguchi K, Hattori S, Matsubara K, Matsuda Y, Yamashita A, Isomoto A, Mori K, Tashiro K, Kuhara S, Yamasaki S, Fujie M, Goto H, Koyanagi R, Takeuchi T, Fukumaki Y, Ohno M, Shoguchi E, Hisata K, Satoh N, Ogawa T.

Sci Rep. 2018 Jul 26;8(1):11300. doi: 10.1038/s41598-018-28749-4.

5.

Decrease in the prevalence of extended-spectrum cephalosporin-resistant Salmonella following cessation of ceftiofur use by the Japanese poultry industry.

Shigemura H, Matsui M, Sekizuka T, Onozuka D, Noda T, Yamashita A, Kuroda M, Suzuki S, Kimura H, Fujimoto S, Oishi K, Sera N, Inoshima Y, Murakami K.

Int J Food Microbiol. 2018 Jun 2;274:45-51. doi: 10.1016/j.ijfoodmicro.2018.03.011. Epub 2018 Mar 17.

PMID:
29626788
6.

A summary of the imported cases of Chikungunya fever in Japan from 2006 to June 2016.

Nakayama E, Tajima S, Kotaki A, Shibasaki KI, Itokawa K, Kato K, Yamashita A, Sekizuka T, Kuroda M, Tomita T, Saijo M, Takasaki T.

J Travel Med. 2018 Jan 1;25(1). doi: 10.1093/jtm/tax072.

PMID:
29394382
7.

Isolation and Complete Genome Sequencing of Zika Virus Imported from the Dominican Republic to Japan.

Ozawa H, Tajima S, Nakayama E, Kato K, Yamashita A, Sekizuka T, Kuroda M, Usuku S.

Jpn J Infect Dis. 2018 Jan 23;71(1):72-74. doi: 10.7883/yoken.JJID.2017.256. Epub 2017 Dec 26.

8.

Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015.

Motoya T, Nagasawa K, Matsushima Y, Nagata N, Ryo A, Sekizuka T, Yamashita A, Kuroda M, Morita Y, Suzuki Y, Sasaki N, Katayama K, Kimura H.

Front Microbiol. 2017 Dec 5;8:2399. doi: 10.3389/fmicb.2017.02399. eCollection 2017.

9.

Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids.

Sekizuka T, Kawanishi M, Ohnishi M, Shima A, Kato K, Yamashita A, Matsui M, Suzuki S, Kuroda M.

Sci Rep. 2017 Apr 19;7(1):928. doi: 10.1038/s41598-017-01082-y.

10.

Characterization of the Pathogenicity of Streptococcus intermedius TYG1620 Isolated from a Human Brain Abscess Based on the Complete Genome Sequence with Transcriptome Analysis and Transposon Mutagenesis in a Murine Subcutaneous Abscess Model.

Hasegawa N, Sekizuka T, Sugi Y, Kawakami N, Ogasawara Y, Kato K, Yamashita A, Takeuchi F, Kuroda M.

Infect Immun. 2017 Jan 26;85(2). pii: e00886-16. doi: 10.1128/IAI.00886-16. Print 2017 Feb.

11.

Prevalence of Colistin Resistance Gene mcr-1 and Absence of mcr-2 in Escherichia coli Isolated from Healthy Food-Producing Animals in Japan.

Kawanishi M, Abo H, Ozawa M, Uchiyama M, Shirakawa T, Suzuki S, Shima A, Yamashita A, Sekizuka T, Kato K, Kuroda M, Koike R, Kijima M.

Antimicrob Agents Chemother. 2016 Dec 27;61(1). pii: e02057-16. doi: 10.1128/AAC.02057-16. Print 2017 Jan.

12.

DGV: Dengue Genographic Viewer.

Yamashita A, Sakamoto T, Sekizuka T, Kato K, Takasaki T, Kuroda M.

Front Microbiol. 2016 Jun 7;7:875. doi: 10.3389/fmicb.2016.00875. eCollection 2016.

13.

Two different dengue virus strains in the Japanese epidemics of 2014.

Nakayama E, Kotaki A, Tajima S, Kawada M, Miura K, Gemma A, Adachi T, Sekizuka T, Kato K, Yamashita A, Moi ML, Ikeda M, Yagasaki K, Shibasaki K, Saijo M, Kuroda M, Takasaki T.

Virus Genes. 2016 Oct;52(5):722-6. doi: 10.1007/s11262-016-1356-4. Epub 2016 May 26.

PMID:
27229877
14.

Distribution and Relationships of Antimicrobial Resistance Determinants among Extended-Spectrum-Cephalosporin-Resistant or Carbapenem-Resistant Escherichia coli Isolates from Rivers and Sewage Treatment Plants in India.

Akiba M, Sekizuka T, Yamashita A, Kuroda M, Fujii Y, Murata M, Lee K, Joshua DI, Balakrishna K, Bairy I, Subramanian K, Krishnan P, Munuswamy N, Sinha RK, Iwata T, Kusumoto M, Guruge KS.

Antimicrob Agents Chemother. 2016 Apr 22;60(5):2972-80. doi: 10.1128/AAC.01950-15. Print 2016 May.

15.

VirusTAP: Viral Genome-Targeted Assembly Pipeline.

Yamashita A, Sekizuka T, Kuroda M.

Front Microbiol. 2016 Feb 2;7:32. doi: 10.3389/fmicb.2016.00032. eCollection 2016.

16.

TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.

Sekizuka T, Yamashita A, Murase Y, Iwamoto T, Mitarai S, Kato S, Kuroda M.

PLoS One. 2015 Nov 13;10(11):e0142951. doi: 10.1371/journal.pone.0142951. eCollection 2015.

17.

Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis.

Kinumaki A, Sekizuka T, Hamada H, Kato K, Yamashita A, Kuroda M.

Front Microbiol. 2015 Aug 11;6:824. doi: 10.3389/fmicb.2015.00824. eCollection 2015.

18.

Characterization of Antimicrobial Resistance Dissemination across Plasmid Communities Classified by Network Analysis.

Yamashita A, Sekizuka T, Kuroda M.

Pathogens. 2014 Apr 15;3(2):356-76. doi: 10.3390/pathogens3020356.

19.

Human monoclonal antibodies derived from a patient infected with 2009 pandemic influenza A virus broadly cross-neutralize group 1 influenza viruses.

Pan Y, Sasaki T, Kubota-Koketsu R, Inoue Y, Yasugi M, Yamashita A, Ramadhany R, Arai Y, Du A, Boonsathorn N, Ibrahim MS, Daidoji T, Nakaya T, Ono K, Okuno Y, Ikuta K, Watanabe Y.

Biochem Biophys Res Commun. 2014 Jul 18;450(1):42-8. doi: 10.1016/j.bbrc.2014.05.060. Epub 2014 May 22.

PMID:
24858683
20.

A highly conserved region between amino acids 221 and 266 of dengue virus non-structural protein 1 is a major epitope region in infected patients.

Omokoko MD, Pambudi S, Phanthanawiboon S, Masrinoul P, Setthapramote C, Sasaki T, Kuhara M, Ramasoota P, Yamashita A, Hirai I, Ikuta K, Kurosu T.

Am J Trop Med Hyg. 2014 Jul;91(1):146-55. doi: 10.4269/ajtmh.13-0624. Epub 2014 Apr 28.

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