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Items: 1 to 20 of 50

1.

Computational Studies on Water-Catalyzed Mechanisms for Stereoinversion of Glutarimide Intermediates Formed from Glutamic Acid Residues in Aqueous Phase.

Nakayoshi T, Fukuyoshi S, Kato K, Kurimoto E, Oda A.

Int J Mol Sci. 2019 May 15;20(10). pii: E2410. doi: 10.3390/ijms20102410.

2.

Antiproliferative Aspidosperma-Type Monoterpenoid Indole Alkaloids from Bousigonia mekongensis Inhibit Tubulin Polymerization.

Zhang Y, Goto M, Oda A, Hsu PL, Guo LL, Fu YH, Morris-Natschke SL, Hamel E, Lee KH, Hao XJ.

Molecules. 2019 Mar 31;24(7). pii: E1256. doi: 10.3390/molecules24071256.

3.

Possible Mechanisms of Nonenzymatic Formation of Dehydroalanine Residue Catalyzed by Dihydrogen Phosphate Ion.

Nakayoshi T, Kato K, Kurimoto E, Oda A.

J Phys Chem B. 2019 Apr 18;123(15):3147-3155. doi: 10.1021/acs.jpcb.8b10386. Epub 2019 Apr 9.

PMID:
30916562
4.

Functional characterization of 50 CYP2D6 allelic variants by assessing primaquine 5-hydroxylation.

Saito T, Gutiérrez Rico EM, Kikuchi A, Kaneko A, Kumondai M, Akai F, Saigusa D, Oda A, Hirasawa N, Hiratsuka M.

Drug Metab Pharmacokinet. 2018 Dec;33(6):250-257. doi: 10.1016/j.dmpk.2018.08.004. Epub 2018 Aug 25.

PMID:
30366777
5.

Functional characterization of 40 CYP2B6 allelic variants by assessing efavirenz 8-hydroxylation.

Watanabe T, Saito T, Rico EMG, Hishinuma E, Kumondai M, Maekawa M, Oda A, Saigusa D, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M.

Biochem Pharmacol. 2018 Oct;156:420-430. doi: 10.1016/j.bcp.2018.09.010. Epub 2018 Sep 8.

PMID:
30201214
6.

Novel androgen receptor full antagonists: Design, synthesis, and a docking study of glycerol and aminoglycerol derivatives that contain p-carborane cages.

Kaise A, Ohta K, Fujii S, Oda A, Goto T, Endo Y.

Bioorg Med Chem. 2018 Jul 30;26(13):3805-3811. doi: 10.1016/j.bmc.2018.06.007. Epub 2018 Jun 7.

PMID:
29903411
7.

Triazine-Based Cationic Leaving Group: Synergistic Driving Forces for Rapid Formation of Carbocation Species.

Fujita H, Kakuyama S, Fukuyoshi S, Hayakawa N, Oda A, Kunishima M.

J Org Chem. 2018 Apr 20;83(8):4568-4580. doi: 10.1021/acs.joc.8b00331. Epub 2018 Apr 9.

PMID:
29616811
8.

Computational studies on the water-catalyzed stereoinversion mechanism of glutamic acid residues in peptides and proteins.

Nakayoshi T, Kato K, Fukuyoshi S, Takahashi O, Kurimoto E, Oda A.

Chirality. 2018 May;30(5):527-535. doi: 10.1002/chir.22841. Epub 2018 Mar 12.

PMID:
29528512
9.

Validation of molecular force field parameters for peptides including isomerized amino acids.

Oda A, Nakayoshi T, Fukuyoshi S, Kurimoto E, Yamaotsu N, Hirono S, Takahashi O.

Chirality. 2018 Apr;30(4):332-341. doi: 10.1002/chir.22821. Epub 2018 Feb 2.

PMID:
29393985
10.

The assembly mechanism of coiled-coil domains of the yeast cargo receptors Emp46p/47p and the mutational alteration of pH-dependency of complex formation.

Kato K, Furuhashi T, Kato K, Oda A, Kurimoto E.

J Biochem. 2018 May 1;163(5):441-446. doi: 10.1093/jb/mvy011.

PMID:
29361014
11.

Functional characterization of 9 CYP2A13 allelic variants by assessment of nicotine C-oxidation and coumarin 7-hydroxylation.

Kumondai M, Hosono H, Maekawa M, Yamaguchi H, Mano N, Oda A, Hirasawa N, Hiratsuka M.

Drug Metab Pharmacokinet. 2018 Feb;33(1):82-89. doi: 10.1016/j.dmpk.2017.11.004. Epub 2017 Nov 22.

PMID:
29342418
12.

Influences of conformations of peptides on stereoinversions and/or isomerizations of aspartic acid residues.

Oda A, Nakayoshi T, Fukuyoshi S, Kurimoto E, Takahashi O.

Biochim Biophys Acta Proteins Proteom. 2018 Jul;1866(7):783-788. doi: 10.1016/j.bbapap.2018.01.006. Epub 2018 Jan 11.

PMID:
29331333
13.

Comparison of the activation energy barrier for succinimide formation from α- and β-aspartic acid residues obtained from density functional theory calculations.

Nakayoshi T, Kato K, Fukuyoshi S, Takahashi O, Kurimoto E, Oda A.

Biochim Biophys Acta Proteins Proteom. 2018 Jul;1866(7):759-766. doi: 10.1016/j.bbapap.2017.12.011. Epub 2018 Jan 3.

PMID:
29305913
14.

Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small Proteins.

Kato K, Nakayoshi T, Fukuyoshi S, Kurimoto E, Oda A.

Molecules. 2017 Oct 12;22(10). pii: E1716. doi: 10.3390/molecules22101716.

15.

Difference in substrate specificity of carboxylesterase and arylacetamide deacetylase between dogs and humans.

Yoshida T, Fukami T, Kurokawa T, Gotoh S, Oda A, Nakajima M.

Eur J Pharm Sci. 2018 Jan 1;111:167-176. doi: 10.1016/j.ejps.2017.09.040. Epub 2017 Sep 28.

PMID:
28966098
16.

Functional characterization of 21 allelic variants of dihydropyrimidinase.

Hishinuma E, Akai F, Narita Y, Maekawa M, Yamaguchi H, Mano N, Oda A, Hirasawa N, Hiratsuka M.

Biochem Pharmacol. 2017 Nov 1;143:118-128. doi: 10.1016/j.bcp.2017.06.121. Epub 2017 Jun 19.

PMID:
28642038
17.

Investigation of substrate recognition for cytochrome P450 1A2 mediated by water molecules using docking and molecular dynamics simulations.

Watanabe Y, Fukuyoshi S, Kato K, Hiratsuka M, Yamaotsu N, Hirono S, Gouda H, Oda A.

J Mol Graph Model. 2017 Jun;74:326-336. doi: 10.1016/j.jmgm.2017.04.006. Epub 2017 Apr 13.

PMID:
28475969
18.

Functional Characterization of 34 CYP2A6 Allelic Variants by Assessment of Nicotine C-Oxidation and Coumarin 7-Hydroxylation Activities.

Hosono H, Kumondai M, Maekawa M, Yamaguchi H, Mano N, Oda A, Hirasawa N, Hiratsuka M.

Drug Metab Dispos. 2017 Mar;45(3):279-285. doi: 10.1124/dmd.116.073494. Epub 2016 Dec 14.

PMID:
27974382
19.

Triethylated chromones with substituted naphthalenes as tubulin inhibitors.

Nakagawa-Goto K, Taniguchi Y, Watanabe Y, Oda A, Ohkoshi E, Hamel E, Lee KH, Goto M.

Bioorg Med Chem. 2016 Nov 15;24(22):6048-6057. doi: 10.1016/j.bmc.2016.09.062. Epub 2016 Sep 25.

20.

Prediction of three-dimensional structures and structural flexibilities of wild-type and mutant cytochrome P450 1A2 using molecular dynamics simulations.

Watanabe Y, Fukuyoshi S, Hiratsuka M, Yamaotsu N, Hirono S, Takahashi O, Oda A.

J Mol Graph Model. 2016 Jul;68:48-56. doi: 10.1016/j.jmgm.2016.06.006. Epub 2016 Jun 16.

PMID:
27371932

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