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Items: 1 to 20 of 121


Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype.

Borges R, Fonseca J, Gomes C, Johnson WE, O'Brien SJ, Zhang G, Gilbert MTP, Jarvis ED, Antunes A.

Genome Biol Evol. 2019 Aug 1;11(8):2244-2255. doi: 10.1093/gbe/evz111.


Characterization of the First Conotoxin from Conus ateralbus, a Vermivorous Cone Snail from the Cabo Verde Archipelago.

Neves JLB, Imperial JS, Morgenstern D, Ueberheide B, Gajewiak J, Antunes A, Robinson SD, Espino S, Watkins M, Vasconcelos V, Olivera BM.

Mar Drugs. 2019 Jul 24;17(8). pii: E432. doi: 10.3390/md17080432.


White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability.

Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, Shivji MS.

Proc Natl Acad Sci U S A. 2019 Feb 19. pii: 201819778. doi: 10.1073/pnas.1819778116. [Epub ahead of print]


Transcriptomic Characterization of the South American Freshwater Stingray Potamotrygon motoro Venom Apparatus.

Silva F, Huang Y, Yang V, Mu X, Shi Q, Antunes A.

Toxins (Basel). 2018 Dec 18;10(12). pii: E544. doi: 10.3390/toxins10120544.


The Harderian gland transcriptomes of Caraiba andreae, Cubophis cantherigerus and Tretanorhinus variabilis, three colubroid snakes from Cuba.

Domínguez-Pérez D, Durban J, Agüero-Chapin G, López JT, Molina-Ruiz R, Almeida D, Calvete JJ, Vasconcelos V, Antunes A.

Genomics. 2018 Dec 1. pii: S0888-7543(18)30501-9. doi: 10.1016/j.ygeno.2018.11.026. [Epub ahead of print]


Measuring phylogenetic signal between categorical traits and phylogenies.

Borges R, Machado JP, Gomes C, Rocha AP, Antunes A.

Bioinformatics. 2019 Jun 1;35(11):1862-1869. doi: 10.1093/bioinformatics/bty800.


Genus-wide comparison of Pseudovibrio bacterial genomes reveal diverse adaptations to different marine invertebrate hosts.

Alex A, Antunes A.

PLoS One. 2018 May 18;13(5):e0194368. doi: 10.1371/journal.pone.0194368. eCollection 2018.


Surveying alignment-free features for Ortholog detection in related yeast proteomes by using supervised big data classifiers.

Galpert D, Fernández A, Herrera F, Antunes A, Molina-Ruiz R, Agüero-Chapin G.

BMC Bioinformatics. 2018 May 3;19(1):166. doi: 10.1186/s12859-018-2148-8.


Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Hernández YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Núñez A, Brandt JR, Silva F, Hernández-Martich JD, Majeske AJ, Antunes A, Roca AL, O'Brien SJ, Martínez-Cruzado JC, Oleksyk TK.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy025.


Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments.

Borges R, Johnson WE, O'Brien SJ, Gomes C, Heesy CP, Antunes A.

BMC Genomics. 2018 Feb 5;19(1):121. doi: 10.1186/s12864-017-4417-8.


Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosa.

Domínguez-Pérez D, Campos A, Alexei Rodríguez A, Turkina MV, Ribeiro T, Osorio H, Vasconcelos V, Antunes A.

Mar Drugs. 2018 Jan 24;16(2). pii: E42. doi: 10.3390/md16020042.


The Swinholide Biosynthesis Gene Cluster from a Terrestrial Cyanobacterium, Nostoc sp. Strain UHCC 0450.

Humisto A, Jokela J, Liu L, Wahlsten M, Wang H, Permi P, Machado JP, Antunes A, Fewer DP, Sivonen K.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e02321-17. doi: 10.1128/AEM.02321-17. Print 2018 Feb 1.


The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth.

Gaubert P, Antunes A, Meng H, Miao L, Peigné S, Justy F, Njiokou F, Dufour S, Danquah E, Alahakoon J, Verheyen E, Stanley WT, O'Brien SJ, Johnson WE, Luo SJ.

J Hered. 2018 May 11;109(4):347-359. doi: 10.1093/jhered/esx097.


Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E.

Sci Adv. 2017 Jul 19;3(7):e1700299. doi: 10.1126/sciadv.1700299. eCollection 2017 Jul.


Exploring general-purpose protein features for distinguishing enzymes and non-enzymes within the twilight zone.

Ruiz-Blanco YB, Agüero-Chapin G, García-Hernández E, Álvarez O, Antunes A, Green J.

BMC Bioinformatics. 2017 Jul 21;18(1):349. doi: 10.1186/s12859-017-1758-x. No abstract available.


Beyond the beaten path: improving natural products bioprospecting using an eco-evolutionary framework - the case of the octocorals.

Ledoux JB, Antunes A.

Crit Rev Biotechnol. 2018 Mar;38(2):184-198. doi: 10.1080/07388551.2017.1331335. Epub 2017 Jun 26. Review.


Adaptive Patterns of Mitogenome Evolution Are Associated with the Loss of Shell Scutes in Turtles.

Escalona T, Weadick CJ, Antunes A.

Mol Biol Evol. 2017 Oct 1;34(10):2522-2536. doi: 10.1093/molbev/msx167.


Analysis of Pelagia noctiluca proteome Reveals a Red Fluorescent Protein, a Zinc Metalloproteinase and a Peroxiredoxin.

Frazão B, Campos A, Osório H, Thomas B, Leandro S, Teixeira A, Vasconcelos V, Antunes A.

Protein J. 2017 Apr;36(2):77-97. doi: 10.1007/s10930-017-9695-0.


Microcystin-LR Detected in a Low Molecular Weight  Fraction from a Crude Extract of Zoanthus sociatus.

Domínguez-Pérez D, Rodríguez AA, Osorio H, Azevedo J, Castañeda O, Vasconcelos V, Antunes A.

Toxins (Basel). 2017 Mar 1;9(3). pii: E89. doi: 10.3390/toxins9030089.

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