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Items: 12


BLAST-based validation of metagenomic sequence assignments.

Bazinet AL, Ondov BD, Sommer DD, Ratnayake S.

PeerJ. 2018 May 28;6:e4892. doi: 10.7717/peerj.4892. eCollection 2018.


Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens.

Loreille O, Ratnayake S, Bazinet AL, Stockwell TB, Sommer DD, Rohland N, Mallick S, Johnson PLF, Skoglund P, Onorato AJ, Bergman NH, Reich D, Irwin JA.

Genes (Basel). 2018 Mar 1;9(3). pii: E135. doi: 10.3390/genes9030135.


Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia).

Goodheart JA, Bazinet AL, Valdés Á, Collins AG, Cummings MP.

BMC Evol Biol. 2017 Oct 26;17(1):221. doi: 10.1186/s12862-017-1066-0.


Pan-genome and phylogeny of Bacillus cereus sensu lato.

Bazinet AL.

BMC Evol Biol. 2017 Aug 2;17(1):176. doi: 10.1186/s12862-017-1020-1.


Historical introgression drives pervasive mitochondrial admixture between two species of pelagic sharks.

Corrigan S, Maisano Delser P, Eddy C, Duffy C, Yang L, Li C, Bazinet AL, Mona S, Naylor GJP.

Mol Phylogenet Evol. 2017 May;110:122-126. doi: 10.1016/j.ympev.2017.03.011. Epub 2017 Mar 10.


Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.

Huson DH, Tappu R, Bazinet AL, Xie C, Cummings MP, Nieselt K, Williams R.

Microbiome. 2017 Jan 25;5(1):11. doi: 10.1186/s40168-017-0233-2.


Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation.

Goodheart JA, Bazinet AL, Collins AG, Cummings MP.

R Soc Open Sci. 2015 Sep 23;2(9):150196. doi: 10.1098/rsos.150196. eCollection 2015 Sep.


A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0.

Bazinet AL, Zwickl DJ, Cummings MP.

Syst Biol. 2014 Sep;63(5):812-8. doi: 10.1093/sysbio/syu031. Epub 2014 Apr 30.


Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study.

Bazinet AL, Cummings MP, Mitter KT, Mitter CW.

PLoS One. 2013 Dec 4;8(12):e82615. doi: 10.1371/journal.pone.0082615. eCollection 2013.


A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies).

Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn JC, Zwickl DJ, Cho S, Davis DR, Baixeras J, Brown J, Parr C, Weller S, Lees DC, Mitter KT.

PLoS One. 2013;8(3):e58568. doi: 10.1371/journal.pone.0058568. Epub 2013 Mar 12.


A comparative evaluation of sequence classification programs.

Bazinet AL, Cummings MP.

BMC Bioinformatics. 2012 May 10;13:92. doi: 10.1186/1471-2105-13-92.


Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study.

Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C, Davis DR, Epstein M, Hallwachs W, Hausmann A, Janzen DH, Kitching IJ, Solis MA, Yen SH, Bazinet AL, Mitter C.

BMC Evol Biol. 2009 Dec 2;9:280. doi: 10.1186/1471-2148-9-280.

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