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Items: 1 to 20 of 32

1.

Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.

Greenlon A, Chang PL, Damtew ZM, Muleta A, Carrasquilla-Garcia N, Kim D, Nguyen HP, Suryawanshi V, Krieg CP, Yadav SK, Patel JS, Mukherjee A, Udupa S, Benjelloun I, Thami-Alami I, Yasin M, Patil B, Singh S, Sarma BK, von Wettberg EJB, Kahraman A, Bukun B, Assefa F, Tesfaye K, Fikre A, Cook DR.

Proc Natl Acad Sci U S A. 2019 Jul 23;116(30):15200-15209. doi: 10.1073/pnas.1900056116. Epub 2019 Jul 8.

PMID:
31285337
2.

Tracing Clonal Dynamics Reveals that Two- and Three-dimensional Patient-derived Cell Models Capture Tumor Heterogeneity of Clear Cell Renal Cell Carcinoma.

Bolck HA, Corrò C, Kahraman A, von Teichman A, Toussaint NC, Kuipers J, Chiovaro F, Koelzer VH, Pauli C, Moritz W, Bode PK, Rechsteiner M, Beerenwinkel N, Schraml P, Moch H.

Eur Urol Focus. 2019 Jun 29. pii: S2405-4569(19)30164-6. doi: 10.1016/j.euf.2019.06.009. [Epub ahead of print]

3.

Tracking microhabitat temperature variation with iButton data loggers.

Fawcett S, Sistla S, Dacosta-Calheiros M, Kahraman A, Reznicek AA, Rosenberg R, von Wettberg EJB.

Appl Plant Sci. 2019 Apr 8;7(4):e01237. doi: 10.1002/aps3.1237. eCollection 2019 Apr.

4.

Non-linear regression models for time to flowering in wild chickpea combine genetic and climatic factors.

Kozlov K, Singh A, Berger J, Bishop-von Wettberg E, Kahraman A, Aydogan A, Cook D, Nuzhdin S, Samsonova M.

BMC Plant Biol. 2019 Mar 19;19(Suppl 2):94. doi: 10.1186/s12870-019-1685-2.

5.

Selenium-Mercury Balance in Commercial Fish Species from the Turkish Waters.

Ulusoy Ş, Mol S, Karakulak FS, Kahraman AE.

Biol Trace Elem Res. 2019 Sep;191(1):207-213. doi: 10.1007/s12011-018-1609-2. Epub 2018 Dec 14.

PMID:
30552608
6.

Development of New SSR (Simple Sequence Repeat) Markers for Lentils (Lens culinaris Medik.) from Genomic Library Enriched with AG and AC Microsatellites.

Bakır M, Kahraman A.

Biochem Genet. 2019 Apr;57(2):338-353. doi: 10.1007/s10528-018-9893-2. Epub 2018 Nov 8.

PMID:
30411176
7.

QTL Mapping of Genome Regions Controlling Manganese Uptake in Lentil Seed.

Ates D, Aldemir S, Yagmur B, Kahraman A, Ozkan H, Vandenberg A, Tanyolac MB.

G3 (Bethesda). 2018 May 4;8(5):1409-1416. doi: 10.1534/g3.118.200259.

8.

Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.

von Wettberg EJB, Chang PL, Başdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Shah Sani SGA, Getahun T, Vance L, Bergmann E, Lindsay D, Mamo BE, Warschefsky EJ, Dacosta-Calheiros E, Marques E, Yilmaz MA, Cakmak A, Rose J, Migneault A, Krieg CP, Saylak S, Temel H, Friesen ML, Siler E, Akhmetov Z, Ozcelik H, Kholova J, Can C, Gaur P, Yildirim M, Sharma H, Vadez V, Tesfaye K, Woldemedhin AF, Tar'an B, Aydogan A, Bukun B, Penmetsa RV, Berger J, Kahraman A, Nuzhdin SV, Cook DR.

Nat Commun. 2018 Feb 13;9(1):649. doi: 10.1038/s41467-018-02867-z.

9.

Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry.

Schopper S, Kahraman A, Leuenberger P, Feng Y, Piazza I, Müller O, Boersema PJ, Picotti P.

Nat Protoc. 2017 Nov;12(11):2391-2410. doi: 10.1038/nprot.2017.100. Epub 2017 Oct 26.

PMID:
29072706
10.

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.

Wang X, Cimermancic P, Yu C, Schweitzer A, Chopra N, Engel JL, Greenberg C, Huszagh AS, Beck F, Sakata E, Yang Y, Novitsky EJ, Leitner A, Nanni P, Kahraman A, Guo X, Dixon JE, Rychnovsky SD, Aebersold R, Baumeister W, Sali A, Huang L.

Mol Cell Proteomics. 2017 May;16(5):840-854. doi: 10.1074/mcp.M116.065326. Epub 2017 Mar 14.

11.

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability.

Leuenberger P, Ganscha S, Kahraman A, Cappelletti V, Boersema PJ, von Mering C, Claassen M, Picotti P.

Science. 2017 Feb 24;355(6327). pii: eaai7825. doi: 10.1126/science.aai7825.

PMID:
28232526
12.

Correction: Identification QTLs Controlling Genes for Se Uptake in Lentil Seeds.

Ates D, Sever T, Aldemir S, Yagmur B, Temel HY, Kaya HB, Alsaleh A, Kahraman A, Ozkan H, Vandenberg A, Tanyolac B.

PLoS One. 2016 Apr 14;11(4):e0154054. doi: 10.1371/journal.pone.0154054. eCollection 2016. No abstract available.

13.

Identification QTLs Controlling Genes for Se Uptake in Lentil Seeds.

Ates D, Sever T, Aldemir S, Yagmur B, Temel HY, Kaya HB, Alsaleh A, Kahraman A, Ozkan H, Vandenberg A, Tanyolac B.

PLoS One. 2016 Mar 15;11(3):e0149210. doi: 10.1371/journal.pone.0149210. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0154054.

14.

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

SIB Swiss Institute of Bioinformatics Members.

Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28.

15.

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints.

Grimm M, Zimniak T, Kahraman A, Herzog F.

Nucleic Acids Res. 2015 Jul 1;43(W1):W362-9. doi: 10.1093/nar/gkv463. Epub 2015 May 8.

16.

Spin trapping combined with quantitative mass spectrometry defines free radical redistribution within the oxidized hemoglobin:haptoglobin complex.

Vallelian F, Garcia-Rubio I, Puglia M, Kahraman A, Deuel JW, Engelsberger WR, Mason RP, Buehler PW, Schaer DJ.

Free Radic Biol Med. 2015 Aug;85:259-68. doi: 10.1016/j.freeradbiomed.2015.04.023. Epub 2015 Apr 28.

PMID:
25933590
17.

Proteomics beyond large-scale protein expression analysis.

Boersema PJ, Kahraman A, Picotti P.

Curr Opin Biotechnol. 2015 Aug;34:162-70. doi: 10.1016/j.copbio.2015.01.005. Epub 2015 Jan 28. Review.

PMID:
25636126
18.

Statistical methods for detecting differentially methylated loci and regions.

Robinson MD, Kahraman A, Law CW, Lindsay H, Nowicka M, Weber LM, Zhou X.

Front Genet. 2014 Sep 16;5:324. doi: 10.3389/fgene.2014.00324. eCollection 2014. Review.

19.

Global analysis of protein structural changes in complex proteomes.

Feng Y, De Franceschi G, Kahraman A, Soste M, Melnik A, Boersema PJ, de Laureto PP, Nikolaev Y, Oliveira AP, Picotti P.

Nat Biotechnol. 2014 Oct;32(10):1036-44. doi: 10.1038/nbt.2999. Epub 2014 Sep 14.

PMID:
25218519
20.

Association mapping for five agronomic traits in the common bean (Phaseolus vulgaris L.).

Nemli S, Asciogul TK, Kaya HB, Kahraman A, Eşiyok D, Tanyolac B.

J Sci Food Agric. 2014 Dec;94(15):3141-51. doi: 10.1002/jsfa.6664. Epub 2014 May 12.

PMID:
24659306

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