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Commentary: Loss of Function Dysbiosis Associated with Antibiotics and High Fat, High Sugar Diet.

Miller AW.

J Infect (Grand Rapids). 2019;2(2):23-25. Epub 2019 May 17. No abstract available.


Defining Dysbiosis for a Cluster of Chronic Diseases.

Wilkins LJ, Monga M, Miller AW.

Sci Rep. 2019 Sep 9;9(1):12918. doi: 10.1038/s41598-019-49452-y.


Inhibition of urinary stone disease by a multi-species bacterial network ensures healthy oxalate homeostasis.

Miller AW, Choy D, Penniston KL, Lange D.

Kidney Int. 2019 Jul;96(1):180-188. doi: 10.1016/j.kint.2019.02.012. Epub 2019 Feb 28.


Defining Dysbiosis in Patients with Urolithiasis.

Zampini A, Nguyen AH, Rose E, Monga M, Miller AW.

Sci Rep. 2019 Apr 1;9(1):5425. doi: 10.1038/s41598-019-41977-6.


Loss of function dysbiosis associated with antibiotics and high fat, high sugar diet.

Miller AW, Orr T, Dearing D, Monga M.

ISME J. 2019 Jun;13(6):1379-1390. doi: 10.1038/s41396-019-0357-4. Epub 2019 Jan 30.


Response to Lange re: Calcium Oxalate Urolithiasis: A Case of Missing Microbes?

Batagello CA, Monga M, Miller AW.

J Endourol. 2018 Nov;32(11):1007. doi: 10.1089/ No abstract available.


Metagenomic sequencing provides insights into microbial detoxification in the guts of small mammalian herbivores (Neotoma spp.).

Kohl KD, Oakeson KF, Orr TJ, Miller AW, Forbey JS, Phillips CD, Dale C, Weiss RB, Dearing MD.

FEMS Microbiol Ecol. 2018 Nov 1;94(12). doi: 10.1093/femsec/fiy184.


Calcium Oxalate Urolithiasis: A Case of Missing Microbes?

Batagello CA, Monga M, Miller AW.

J Endourol. 2018 Nov;32(11):995-1005. doi: 10.1089/end.2018.0294. Epub 2018 Oct 20.


Intestinal Epithelial Cell-Derived LKB1 Suppresses Colitogenic Microbiota.

Liu X, Lu J, Liu Z, Zhao J, Sun H, Wu N, Liu H, Liu W, Hu Z, Meng G, Shen L, Miller AW, Su B, Li X, Kang Z.

J Immunol. 2018 Mar 1;200(5):1889-1900. doi: 10.4049/jimmunol.1700547. Epub 2018 Jan 19.


Microbiota Diversification and Crash Induced by Dietary Oxalate in the Mammalian Herbivore Neotoma albigula.

Miller AW, Dale C, Dearing MD.

mSphere. 2017 Oct 18;2(5). pii: e00428-17. doi: 10.1128/mSphere.00428-17. eCollection 2017 Sep-Oct.


The Induction of Oxalate Metabolism In Vivo Is More Effective with Functional Microbial Communities than with Functional Microbial Species.

Miller AW, Dale C, Dearing MD.

mSystems. 2017 Sep 26;2(5). pii: e00088-17. doi: 10.1128/mSystems.00088-17. eCollection 2017 Sep-Oct.


LRRK2 promotes the activation of NLRC4 inflammasome during Salmonella Typhimurium infection.

Liu W, Liu X, Li Y, Zhao J, Liu Z, Hu Z, Wang Y, Yao Y, Miller AW, Su B, Cookson MR, Li X, Kang Z.

J Exp Med. 2017 Oct 2;214(10):3051-3066. doi: 10.1084/jem.20170014. Epub 2017 Aug 18.


Modeling time-series data from microbial communities.

Ridenhour BJ, Brooker SL, Williams JE, Van Leuven JT, Miller AW, Dearing MD, Remien CH.

ISME J. 2017 Nov;11(11):2526-2537. doi: 10.1038/ismej.2017.107. Epub 2017 Aug 8.


Chemostat Culture for Yeast Physiology and Experimental Evolution.

Dunham MJ, Kerr EO, Miller AW, Payen C.

Cold Spring Harb Protoc. 2017 Jul 5;2017(7):pdb.top077610. doi: 10.1101/pdb.top077610.


Assembly of a Mini-Chemostat Array.

Miller AW, Kerr EO, Dunham MJ.

Cold Spring Harb Protoc. 2017 Jul 5;2017(7):pdb.prot088997. doi: 10.1101/pdb.prot088997.


Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast.

Hope EA, Amorosi CJ, Miller AW, Dang K, Heil CS, Dunham MJ.

Genetics. 2017 Jun;206(2):1153-1167. doi: 10.1534/genetics.116.198895. Epub 2017 Apr 26.


A multiplex culture system for the long-term growth of fission yeast cells.

Callens C, Coelho NC, Miller AW, Sananes MRD, Dunham MJ, Denoual M, Coudreuse D.

Yeast. 2017 Aug;34(8):343-355. doi: 10.1002/yea.3237. Epub 2017 Jun 6.


Differential paralog divergence modulates genome evolution across yeast species.

Sanchez MR, Miller AW, Liachko I, Sunshine AB, Lynch B, Huang M, Alcantara E, DeSevo CG, Pai DA, Tucker CM, Hoang ML, Dunham MJ.

PLoS Genet. 2017 Feb 14;13(2):e1006585. doi: 10.1371/journal.pgen.1006585. eCollection 2017 Feb.


Microbial Community Transplant Results in Increased and Long-Term Oxalate Degradation.

Miller AW, Oakeson KF, Dale C, Dearing MD.

Microb Ecol. 2016 Aug;72(2):470-8. doi: 10.1007/s00248-016-0800-2. Epub 2016 Jun 16.


Effect of Dietary Oxalate on the Gut Microbiota of the Mammalian Herbivore Neotoma albigula.

Miller AW, Oakeson KF, Dale C, Dearing MD.

Appl Environ Microbiol. 2016 Apr 18;82(9):2669-2675. doi: 10.1128/AEM.00216-16. Print 2016 May.

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