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Items: 1 to 20 of 27

1.

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.

Satterstrom FK, Kosmicki JA, Wang J, Breen MS, De Rubeis S, An JY, Peng M, Collins R, Grove J, Klei L, Stevens C, Reichert J, Mulhern MS, Artomov M, Gerges S, Sheppard B, Xu X, Bhaduri A, Norman U, Brand H, Schwartz G, Nguyen R, Guerrero EE, Dias C; Autism Sequencing Consortium; iPSYCH-Broad Consortium, Betancur C, Cook EH, Gallagher L, Gill M, Sutcliffe JS, Thurm A, Zwick ME, Børglum AD, State MW, Cicek AE, Talkowski ME, Cutler DJ, Devlin B, Sanders SJ, Roeder K, Daly MJ, Buxbaum JD.

Cell. 2020 Feb 6;180(3):568-584.e23. doi: 10.1016/j.cell.2019.12.036. Epub 2020 Jan 23.

PMID:
31981491
2.

Metabolomics of Small Intestine Neuroendocrine Tumors and Related Hepatic Metastases.

Imperiale A, Poncet G, Addeo P, Ruhland E, Roche C, Battini S, Cicek AE, Chenard MP, Hervieu V, Goichot B, Bachellier P, Walter T, Namer IJ.

Metabolites. 2019 Dec 11;9(12). pii: E300. doi: 10.3390/metabo9120300.

3.

Metabolomic Profile of Aggressive Meningiomas by Using High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance.

Bender L, Somme F, Ruhland E, Cicek AE, Bund C, Namer IJ.

J Proteome Res. 2020 Jan 3;19(1):292-299. doi: 10.1021/acs.jproteome.9b00521. Epub 2019 Nov 13.

PMID:
31679342
4.

What Does Reduced FDG Uptake Mean in High-Grade Gliomas?

Bund C, Lhermitte B, Cicek AE, Ruhland E, Proust F, Namer IJ.

Clin Nucl Med. 2019 Dec;44(12):936-942. doi: 10.1097/RLU.0000000000002765.

PMID:
31524681
5.

Detailed modeling of positive selection improves detection of cancer driver genes.

Zhao S, Liu J, Nanga P, Liu Y, Cicek AE, Knoblauch N, He C, Stephens M, He X.

Nat Commun. 2019 Jul 30;10(1):3399. doi: 10.1038/s41467-019-11284-9.

6.

An integrated genomic and metabolomic approach for defining survival time in adult oligodendrogliomas patients.

Bund C, Guergova-Kuras M, Cicek AE, Moussallieh FM, Dali-Youcef N, Piotto M, Schneider P, Heller R, Entz-Werle N, Lhermitte B, Chenard MP, Schott R, Proust F, Noël G, Namer IJ.

Metabolomics. 2019 Apr 29;15(5):69. doi: 10.1007/s11306-019-1522-5.

PMID:
31037432
7.

Metabolomic profiling highlights the metabolic bases of acute-on-chronic and post-hepatectomy liver failure.

Faitot F, Ruhland E, Oncioiu C, Besch C, Addeo P, Cicek AE, Bachellier P, Namer IJ.

HPB (Oxford). 2019 Oct;21(10):1354-1361. doi: 10.1016/j.hpb.2019.02.008. Epub 2019 Mar 23.

PMID:
30914156
8.

ST-Steiner: a spatio-temporal gene discovery algorithm.

Norman U, Cicek AE.

Bioinformatics. 2019 Sep 15;35(18):3433-3440. doi: 10.1093/bioinformatics/btz110.

PMID:
30759247
9.

Hercules: a profile HMM-based hybrid error correction algorithm for long reads.

Firtina C, Bar-Joseph Z, Alkan C, Cicek AE.

Nucleic Acids Res. 2018 Nov 30;46(21):e125. doi: 10.1093/nar/gky724.

10.

Re-identification of individuals in genomic data-sharing beacons via allele inference.

von Thenen N, Ayday E, Cicek AE.

Bioinformatics. 2019 Feb 1;35(3):365-371. doi: 10.1093/bioinformatics/bty643.

PMID:
30052749
11.

Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS.

Dobbyn A, Huckins LM, Boocock J, Sloofman LG, Glicksberg BS, Giambartolomei C, Hoffman GE, Perumal TM, Girdhar K, Jiang Y, Raj T, Ruderfer DM, Kramer RS, Pinto D; CommonMind Consortium, Akbarian S, Roussos P, Domenici E, Devlin B, Sklar P, Stahl EA, Sieberts SK.

Am J Hum Genet. 2018 Jun 7;102(6):1169-1184. doi: 10.1016/j.ajhg.2018.04.011. Epub 2018 May 24.

12.

A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.

Liu Y, Liang Y, Cicek AE, Li Z, Li J, Muhle RA, Krenzer M, Mei Y, Wang Y, Knoblauch N, Morrison J, Zhao S, Jiang Y, Geller E, Ionita-Laza I, Wu J, Xia K, Noonan JP, Sun ZS, He X.

Am J Hum Genet. 2018 Jun 7;102(6):1031-1047. doi: 10.1016/j.ajhg.2018.03.023. Epub 2018 May 10.

13.

Characterization of the transcriptional and metabolic responses of pediatric high grade gliomas to mTOR-HIF-1α axis inhibition.

Nguyen A, Moussallieh FM, Mackay A, Cicek AE, Coca A, Chenard MP, Weingertner N, Lhermitte B, Letouzé E, Guérin E, Pencreach E, Jannier S, Guenot D, Namer IJ, Jones C, Entz-Werlé N.

Oncotarget. 2017 Mar 23;8(42):71597-71617. doi: 10.18632/oncotarget.16500. eCollection 2017 Sep 22.

14.

Gene expression elucidates functional impact of polygenic risk for schizophrenia.

Fromer M, Roussos P, Sieberts SK, Johnson JS, Kavanagh DH, Perumal TM, Ruderfer DM, Oh EC, Topol A, Shah HR, Klei LL, Kramer R, Pinto D, Gümüş ZH, Cicek AE, Dang KK, Browne A, Lu C, Xie L, Readhead B, Stahl EA, Xiao J, Parvizi M, Hamamsy T, Fullard JF, Wang YC, Mahajan MC, Derry JM, Dudley JT, Hemby SE, Logsdon BA, Talbot K, Raj T, Bennett DA, De Jager PL, Zhu J, Zhang B, Sullivan PF, Chess A, Purcell SM, Shinobu LA, Mangravite LM, Toyoshiba H, Gur RE, Hahn CG, Lewis DA, Haroutunian V, Peters MA, Lipska BK, Buxbaum JD, Schadt EE, Hirai K, Roeder K, Brennand KJ, Katsanis N, Domenici E, Devlin B, Sklar P.

Nat Neurosci. 2016 Nov;19(11):1442-1453. doi: 10.1038/nn.4399. Epub 2016 Sep 26.

15.

High-resolution magic angle spinning (1)H nuclear magnetic resonance spectroscopy metabolomics of hyperfunctioning parathyroid glands.

Battini S, Imperiale A, Taïeb D, Elbayed K, Cicek AE, Sebag F, Brunaud L, Namer IJ.

Surgery. 2016 Aug;160(2):384-94. doi: 10.1016/j.surg.2016.03.002. Epub 2016 Apr 20.

PMID:
27106795
16.

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.

Sanders SJ, He X, Willsey AJ, Ercan-Sencicek AG, Samocha KE, Cicek AE, Murtha MT, Bal VH, Bishop SL, Dong S, Goldberg AP, Jinlu C, Keaney JF 3rd, Klei L, Mandell JD, Moreno-De-Luca D, Poultney CS, Robinson EB, Smith L, Solli-Nowlan T, Su MY, Teran NA, Walker MF, Werling DM, Beaudet AL, Cantor RM, Fombonne E, Geschwind DH, Grice DE, Lord C, Lowe JK, Mane SM, Martin DM, Morrow EM, Talkowski ME, Sutcliffe JS, Walsh CA, Yu TW; Autism Sequencing Consortium, Ledbetter DH, Martin CL, Cook EH, Buxbaum JD, Daly MJ, Devlin B, Roeder K, State MW.

Neuron. 2015 Sep 23;87(6):1215-1233. doi: 10.1016/j.neuron.2015.09.016.

17.

De novo ChIP-seq analysis.

He X, Cicek AE, Wang Y, Schulz MH, Le HS, Bar-Joseph Z.

Genome Biol. 2015 Sep 23;16:205. doi: 10.1186/s13059-015-0756-4.

18.

MIRA: mutual information-based reporter algorithm for metabolic networks.

Cicek AE, Roeder K, Ozsoyoglu G.

Bioinformatics. 2015 Apr 1;31(7):1160. doi: 10.1093/bioinformatics/btv081. Epub 2015 Mar 10. No abstract available.

19.

Metabolome profiling by HRMAS NMR spectroscopy of pheochromocytomas and paragangliomas detects SDH deficiency: clinical and pathophysiological implications.

Imperiale A, Moussallieh FM, Roche P, Battini S, Cicek AE, Sebag F, Brunaud L, Barlier A, Elbayed K, Loundou A, Bachellier P, Goichot B, Stratakis CA, Pacak K, Namer IJ, Taïeb D.

Neoplasia. 2015 Jan;17(1):55-65. doi: 10.1016/j.neo.2014.10.010.

20.

MIRA: mutual information-based reporter algorithm for metabolic networks.

Cicek AE, Roeder K, Ozsoyoglu G.

Bioinformatics. 2014 Jun 15;30(12):i175-84. doi: 10.1093/bioinformatics/btu290. Erratum in: Bioinformatics. 2015 Apr 1;31(7):1160.

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