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Best matches for Ádám Novák:

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Fiddes IT et al. Cell. (2018)

Toil enables reproducible, open source, big biomedical data analyses. Vivian J et al. Nat Biotechnol. (2017)

Computational pan-genomics: status, promises and challenges. Computational Pan-Genomics Consortium. et al. Brief Bioinform. (2018)

Search results

Items: 1 to 20 of 28

1.

Haplotype-aware graph indexes.

Sirén J, Garrison E, Novak AM, Paten B, Durbin R.

Bioinformatics. 2019 Jul 26. pii: btz575. doi: 10.1093/bioinformatics/btz575. [Epub ahead of print]

PMID:
31406990
2.

Sequence tube maps: making graph genomes intuitive to commuters.

Beyer W, Novak AM, Hickey G, Chan J, Tan V, Paten B, Zerbino DR.

Bioinformatics. 2019 Aug 1. pii: btz597. doi: 10.1093/bioinformatics/btz597. [Epub ahead of print]

PMID:
31368484
3.

Improving safety through speaking up: An ethical and financial imperative.

Novak A.

J Healthc Risk Manag. 2019 Jul;39(1):19-27. doi: 10.1002/jhrm.21360. Epub 2019 Apr 12.

PMID:
30977243
4.

Variation graph toolkit improves read mapping by representing genetic variation in the reference.

Garrison E, Sirén J, Novak AM, Hickey G, Eizenga JM, Dawson ET, Jones W, Garg S, Markello C, Lin MF, Paten B, Durbin R.

Nat Biotechnol. 2018 Oct;36(9):875-879. doi: 10.1038/nbt.4227. Epub 2018 Aug 20.

5.

A graph-based approach to diploid genome assembly.

Garg S, Rautiainen M, Novak AM, Garrison E, Durbin R, Marschall T.

Bioinformatics. 2018 Jul 1;34(13):i105-i114. doi: 10.1093/bioinformatics/bty279.

6.

Correction to Furoxans (Oxadiazole- N-oxides) with Attenuated Reactivity Are Neuroprotective, Cross the Blood Brain Barrier, and Improve Passive Avoidance Memory.

Horton A, Nash K, Tackie-Yarboi E, Kostrevski A, Novak A, Raghavan A, Tulsulkar J, Alhadidi Q, Wamer N, Langenderfer B, Royster K, Ducharme M, Hagood K, Post M, Shah ZA, Schiefer IT.

J Med Chem. 2018 Jul 12;61(13):5773. doi: 10.1021/acs.jmedchem.8b00891. Epub 2018 Jun 21. No abstract available.

PMID:
29927599
7.

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.

Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D.

Cell. 2018 May 31;173(6):1356-1369.e22. doi: 10.1016/j.cell.2018.03.051. Epub 2018 May 31.

8.

A Flow Procedure for Linearization of Genome Sequence Graphs.

Haussler D, Smuga-Otto M, Eizenga JM, Paten B, Novak AM, Nikitin S, Zueva M, Miagkov D.

J Comput Biol. 2018 Jul;25(7):664-676. doi: 10.1089/cmb.2017.0248. Epub 2018 May 24.

9.

Furoxans (Oxadiazole-4 N-oxides) with Attenuated Reactivity are Neuroprotective, Cross the Blood Brain Barrier, and Improve Passive Avoidance Memory.

Horton A, Nash K, Tackie-Yarboi E, Kostrevski A, Novak A, Raghavan A, Tulsulkar J, Alhadidi Q, Wamer N, Langenderfer B, Royster K, Ducharme M, Hagood K, Post M, Shah ZA, Schiefer IT.

J Med Chem. 2018 May 24;61(10):4593-4607. doi: 10.1021/acs.jmedchem.8b00389. Epub 2018 May 7. Erratum in: J Med Chem. 2018 Jul 12;61(13):5773.

10.

Superbubbles, Ultrabubbles, and Cacti.

Paten B, Eizenga JM, Rosen YM, Novak AM, Garrison E, Hickey G.

J Comput Biol. 2018 Jul;25(7):649-663. doi: 10.1089/cmb.2017.0251. Epub 2018 Feb 20.

11.

TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal.

Newton Y, Novak AM, Swatloski T, McColl DC, Chopra S, Graim K, Weinstein AS, Baertsch R, Salama SR, Ellrott K, Chopra M, Goldstein TC, Haussler D, Morozova O, Stuart JM.

Cancer Res. 2017 Nov 1;77(21):e111-e114. doi: 10.1158/0008-5472.CAN-17-0580.

12.

A graph extension of the positional Burrows-Wheeler transform and its applications.

Novak AM, Garrison E, Paten B.

Algorithms Mol Biol. 2017 Jul 11;12:18. doi: 10.1186/s13015-017-0109-9. eCollection 2017.

13.

Toil enables reproducible, open source, big biomedical data analyses.

Vivian J, Rao AA, Nothaft FA, Ketchum C, Armstrong J, Novak A, Pfeil J, Narkizian J, Deran AD, Musselman-Brown A, Schmidt H, Amstutz P, Craft B, Goldman M, Rosenbloom K, Cline M, O'Connor B, Hanna M, Birger C, Kent WJ, Patterson DA, Joseph AD, Zhu J, Zaranek S, Getz G, Haussler D, Paten B.

Nat Biotechnol. 2017 Apr 11;35(4):314-316. doi: 10.1038/nbt.3772. No abstract available.

14.

Genome graphs and the evolution of genome inference.

Paten B, Novak AM, Eizenga JM, Garrison E.

Genome Res. 2017 May;27(5):665-676. doi: 10.1101/gr.214155.116. Epub 2017 Mar 30. Review.

15.

Computational pan-genomics: status, promises and challenges.

Computational Pan-Genomics Consortium.

Brief Bioinform. 2018 Jan 1;19(1):118-135. doi: 10.1093/bib/bbw089. Review.

16.

Canonical, stable, general mapping using context schemes.

Novak AM, Rosen Y, Haussler D, Paten B.

Bioinformatics. 2015 Nov 15;31(22):3569-76. doi: 10.1093/bioinformatics/btv435. Epub 2015 Jul 27.

17.

The NIH BD2K center for big data in translational genomics.

Paten B, Diekhans M, Druker BJ, Friend S, Guinney J, Gassner N, Guttman M, Kent WJ, Mantey P, Margolin AA, Massie M, Novak AM, Nothaft F, Pachter L, Patterson D, Smuga-Otto M, Stuart JM, Van't Veer L, Wold B, Haussler D.

J Am Med Inform Assoc. 2015 Nov;22(6):1143-7. doi: 10.1093/jamia/ocv047. Epub 2015 Jul 13.

18.

Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.

Herman JL, Novák Á, Lyngsø R, Szabó A, Miklós I, Hein J.

BMC Bioinformatics. 2015 Apr 1;16:108. doi: 10.1186/s12859-015-0516-1.

19.

Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure.

Herman JL, Challis CJ, Novák Á, Hein J, Schmidler SC.

Mol Biol Evol. 2014 Sep;31(9):2251-66. doi: 10.1093/molbev/msu184. Epub 2014 Jun 4.

20.

Quantifying variances in comparative RNA secondary structure prediction.

Anderson JW, Novák Á, Sükösd Z, Golden M, Arunapuram P, Edvardsson I, Hein J.

BMC Bioinformatics. 2013 May 1;14:149. doi: 10.1186/1471-2105-14-149.

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