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Items: 1 to 20 of 32

1.

Autocatalytic networks in biology: structural theory and algorithms.

Steel M, Hordijk W, Xavier JC.

J R Soc Interface. 2019 Feb 28;16(151):20180808. doi: 10.1098/rsif.2018.0808.

PMID:
30958202
2.

Molecular Diversity Required for the Formation of Autocatalytic Sets.

Hordijk W, Steel M, Kauffman SA.

Life (Basel). 2019 Mar 1;9(1). pii: E23. doi: 10.3390/life9010023.

3.

Autocatalytic Networks at the Basis of Life's Origin and Organization.

Hordijk W, Steel M.

Life (Basel). 2018 Dec 8;8(4). pii: E62. doi: 10.3390/life8040062. Review.

4.

Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World.

Hordijk W, Naylor J, Krasnogor N, Fellermann H.

Life (Basel). 2018 Aug 18;8(3). pii: E33. doi: 10.3390/life8030033.

5.

Niche emergence as an autocatalytic process in the evolution of ecosystems.

Cazzolla Gatti R, Fath B, Hordijk W, Kauffman S, Ulanowicz R.

J Theor Biol. 2018 Oct 7;454:110-117. doi: 10.1016/j.jtbi.2018.05.038. Epub 2018 Jun 1.

PMID:
29864429
6.

The Influence of Modularity, Seeding, and Product Inhibition on Peptide Autocatalytic Network Dynamics.

Hordijk W, Shichor S, Ashkenasy G.

Chemphyschem. 2018 Sep 18;19(18):2437-2444. doi: 10.1002/cphc.201800101. Epub 2018 Jun 19.

PMID:
29813174
7.

Autocatalytic confusion clarified.

Hordijk W.

J Theor Biol. 2017 Dec 21;435:22-28. doi: 10.1016/j.jtbi.2017.09.003. Epub 2017 Sep 6. Review.

PMID:
28888946
8.

Autocatalytic Sets and RNA Secondary Structure.

Hordijk W.

J Mol Evol. 2017 Apr;84(4):153-158. doi: 10.1007/s00239-017-9787-7. Epub 2017 Apr 4.

PMID:
28378190
9.

Chasing the tail: The emergence of autocatalytic networks.

Hordijk W, Steel M.

Biosystems. 2017 Feb;152:1-10. doi: 10.1016/j.biosystems.2016.12.002. Epub 2016 Dec 25. Review.

PMID:
28027958
10.

Comment on "Tibor Gánti and Robert Rosen" by Athel Cornish-Bowden.

Hordijk W, Steel M.

J Theor Biol. 2016 Mar 7;392:122-3. doi: 10.1016/j.jtbi.2015.11.020. Epub 2015 Nov 27. No abstract available.

PMID:
26640161
11.

Evolution of Autocatalytic Sets in Computational Models of Chemical Reaction Networks.

Hordijk W.

Orig Life Evol Biosph. 2016 Jun;46(2-3):233-45. doi: 10.1007/s11084-015-9471-0. Epub 2015 Oct 23. Review.

PMID:
26499126
12.

Prebiotic network evolution: six key parameters.

Nghe P, Hordijk W, Kauffman SA, Walker SI, Schmidt FJ, Kemble H, Yeates JA, Lehman N.

Mol Biosyst. 2015 Dec;11(12):3206-17. doi: 10.1039/c5mb00593k. Review.

PMID:
26490759
13.

Autocatalytic sets in E. coli metabolism.

Sousa FL, Hordijk W, Steel M, Martin WF.

J Syst Chem. 2015;6(1):4. Epub 2015 Apr 1.

14.

Algorithms for detecting and analysing autocatalytic sets.

Hordijk W, Smith JI, Steel M.

Algorithms Mol Biol. 2015 Apr 28;10:15. doi: 10.1186/s13015-015-0042-8. eCollection 2015.

15.

Autocatalytic sets and boundaries.

Hordijk W, Steel M.

J Syst Chem. 2015;6(1):1. Epub 2015 Feb 12.

16.

Conditions for evolvability of autocatalytic sets: a formal example and analysis.

Hordijk W, Steel M.

Orig Life Evol Biosph. 2014 Apr;44(2):111-24. doi: 10.1007/s11084-014-9374-5. Epub 2014 Dec 5.

PMID:
25476991
17.

Serial transfer can aid the evolution of autocatalytic sets.

Hordijk W, Vaidya N, Lehman N.

J Syst Chem. 2014 Apr 26;5:4. eCollection 2014.

18.

Autocatalytic sets in a partitioned biochemical network.

Smith JI, Steel M, Hordijk W.

J Syst Chem. 2014 Mar 3;5:2. eCollection 2014.

19.

Autocatalytic sets and biological specificity.

Hordijk W, Wills PR, Steel M.

Bull Math Biol. 2014 Jan;76(1):201-24.

PMID:
24233808
20.

Minimal autocatalytic networks.

Steel M, Hordijk W, Smith J.

J Theor Biol. 2013 Sep 7;332:96-107. doi: 10.1016/j.jtbi.2013.04.032. Epub 2013 May 3.

PMID:
23648185

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