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Items: 1 to 20 of 31

1.

Volatile Evolution of Long Non-Coding RNA Repertoire in Retinal Pigment Epithelium: Insights from Comparison of Bovine and Human RNA Expression Profiles.

Postnikova OA, Rogozin IB, Samuel W, Nudelman G, Babenko VN, Poliakov E, Redmond TM.

Genes (Basel). 2019 Mar 8;10(3). pii: E205. doi: 10.3390/genes10030205.

2.

Nucleotide Weight Matrices Reveal Ubiquitous Mutational Footprints of AID/APOBEC Deaminases in Human Cancer Genomes.

Rogozin IB, Roche-Lima A, Lada AG, Belinky F, Sidorenko IA, Glazko GV, Babenko VN, Cooper DN, Pavlov YI.

Cancers (Basel). 2019 Feb 12;11(2). pii: E211. doi: 10.3390/cancers11020211.

3.

Altered Slc25 family gene expression as markers of mitochondrial dysfunction in brain regions under experimental mixed anxiety/depression-like disorder.

Babenko VN, Smagin DA, Galyamina AG, Kovalenko IL, Kudryavtseva NN.

BMC Neurosci. 2018 Dec 11;19(1):79. doi: 10.1186/s12868-018-0480-6.

4.

Maternal genetic features of the Iron Age Tagar population from Southern Siberia (1st millennium BC).

Pilipenko AS, Trapezov RO, Cherdantsev SV, Babenko VN, Nesterova MS, Pozdnyakov DV, Molodin VI, Polosmak NV.

PLoS One. 2018 Sep 20;13(9):e0204062. doi: 10.1371/journal.pone.0204062. eCollection 2018.

5.

Purifying and positive selection in the evolution of stop codons.

Belinky F, Babenko VN, Rogozin IB, Koonin EV.

Sci Rep. 2018 Jun 18;8(1):9260. doi: 10.1038/s41598-018-27570-3.

6.

Haplotype analysis of APOE intragenic SNPs.

Babenko VN, Afonnikov DA, Ignatieva EV, Klimov AV, Gusev FE, Rogaev EI.

BMC Neurosci. 2018 Apr 19;19(Suppl 1):16. doi: 10.1186/s12868-018-0413-4.

7.

Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events.

Babenko VN, Gubanova NV, Bragin AO, Chadaeva IV, Vasiliev GV, Medvedeva IV, Gaytan AS, Krivoshapkin AL, Orlov YL.

J Integr Bioinform. 2017 Sep 18;14(3). pii: /j/jib.2017.14.issue-3/jib-2017-0022/jib-2017-0022.xml. doi: 10.1515/jib-2017-0022.

8.

RNA-Seq Mouse Brain Regions Expression Data Analysis: Focus on ApoE Functional Network

Babenko VN, Smagin DA, Kudryavtseva NN.

J Integr Bioinform. 2017 Sep 13;14(3). pii: /j/jib.2017.14.issue-3/jib-2017-0024/jib-2017-0024.xml. doi: 10.1515/jib-2017-0024.

9.

Genomic landscape of CpG rich elements in human.

Babenko VN, Chadaeva IV, Orlov YL.

BMC Evol Biol. 2017 Feb 7;17(Suppl 1):19. doi: 10.1186/s12862-016-0864-0.

10.

Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals.

Babenko VN, Bragin AO, Spitsina AM, Chadaeva IV, Galieva ER, Orlova GV, Medvedeva IV, Orlov YL.

J Integr Bioinform. 2016 Dec 18;13(4):292. doi: 10.2390/biecoll-jib-2016-292.

PMID:
28187408
11.

Heterogeneity of Brain Ribosomal Genes Expression Following Positive Fighting Experience in Male Mice as Revealed by RNA-Seq.

Smagin DA, Kovalenko IL, Galyamina AG, Orlov YL, Babenko VN, Kudryavtseva NN.

Mol Neurobiol. 2018 Jan;55(1):390-401. doi: 10.1007/s12035-016-0327-z. Epub 2016 Dec 12.

PMID:
27957683
12.

Association of IL28B and IL10 gene polymorphism with predisposition to tick-borne encephalitis in a Russian population.

Barkhash AV, Babenko VN, Voevoda MI, Romaschenko AG.

Ticks Tick Borne Dis. 2016 Jul;7(5):808-812. doi: 10.1016/j.ttbdis.2016.03.019. Epub 2016 Apr 1.

PMID:
27068548
13.

Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster.

Zhimulev IF, Zykova TY, Goncharov FP, Khoroshko VA, Demakova OV, Semeshin VF, Pokholkova GV, Boldyreva LV, Demidova DS, Babenko VN, Demakov SA, Belyaeva ES.

PLoS One. 2014 Jul 29;9(7):e101631. doi: 10.1371/journal.pone.0101631. eCollection 2014.

14.

The roles of the monomer length and nucleotide context of plant tandem repeats in nucleosome positioning.

Levitsky VG, Babenko VN, Vershinin AV.

J Biomol Struct Dyn. 2014;32(1):115-26. doi: 10.1080/07391102.2012.755796. Epub 2013 Feb 5.

PMID:
23384242
15.

Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster.

Demakov SA, Vatolina TY, Babenko VN, Semeshin VF, Belyaeva ES, Zhimulev IF.

BMC Genomics. 2011 Nov 18;12:566. doi: 10.1186/1471-2164-12-566.

16.

Single nucleotide polymorphism in the promoter region of the CD209 gene is associated with human predisposition to severe forms of tick-borne encephalitis.

Barkhash AV, Perelygin AA, Babenko VN, Brinton MA, Voevoda MI.

Antiviral Res. 2012 Jan;93(1):64-8. doi: 10.1016/j.antiviral.2011.10.017. Epub 2011 Oct 28.

PMID:
22061615
17.

Identical functional organization of nonpolytene and polytene chromosomes in Drosophila melanogaster.

Vatolina TY, Boldyreva LV, Demakova OV, Demakov SA, Kokoza EB, Semeshin VF, Babenko VN, Goncharov FP, Belyaeva ES, Zhimulev IF.

PLoS One. 2011;6(10):e25960. doi: 10.1371/journal.pone.0025960. Epub 2011 Oct 11. Erratum in: PLoS One. 2011;6(11). doi:10.1371/annotation/45b44e2a-c751-418b-bbb7-7023998abdfc.

18.

Variability in the 2'-5'-oligoadenylate synthetase gene cluster is associated with human predisposition to tick-borne encephalitis virus-induced disease.

Barkhash AV, Perelygin AA, Babenko VN, Myasnikova NG, Pilipenko PI, Romaschenko AG, Voevoda MI, Brinton MA.

J Infect Dis. 2010 Dec 15;202(12):1813-8. doi: 10.1086/657418. Epub 2010 Nov 4.

PMID:
21050126
19.

Gene density profile reveals the marking of late replicated domains in the Drosophila melanogaster genome.

Belyakin SN, Babenko VN, Maksimov DA, Shloma VV, Kvon EZ, Belyaeva ES, Zhimulev IF.

Chromosoma. 2010 Dec;119(6):589-600. doi: 10.1007/s00412-010-0280-y. Epub 2010 Jul 3.

PMID:
20602235
20.

Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome.

Babenko VN, Makunin IV, Brusentsova IV, Belyaeva ES, Maksimov DA, Belyakin SN, Maroy P, Vasil'eva LA, Zhimulev IF.

BMC Genomics. 2010 May 21;11:318. doi: 10.1186/1471-2164-11-318.

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