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Items: 1 to 20 of 852

1.

CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer.

Lever J, Zhao EY, Grewal J, Jones MR, Jones SJM.

Nat Methods. 2019 May 20. doi: 10.1038/s41592-019-0422-y. [Epub ahead of print]

PMID:
31110280
2.

Microfluidic Assembly of siRNA-Loaded Micelleplexes for Tumor Targeting in an Orthotopic Model of Ovarian Cancer.

Feldmann DP, Jones S, Douglas K, Shields AF, Merkel OM.

Methods Mol Biol. 2019;1974:355-369. doi: 10.1007/978-1-4939-9220-1_24.

PMID:
31099014
3.

ntEdit: scalable genome sequence polishing.

Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I.

Bioinformatics. 2019 May 16. pii: btz400. doi: 10.1093/bioinformatics/btz400. [Epub ahead of print]

PMID:
31095290
4.

NRG1 gene fusions are recurrent, clinically actionable gene rearrangements in KRAS wild-type pancreatic ductal adenocarcinoma.

Jones MR, Williamson LM, Topham JT, Lee MK, Goytain A, Ho J, Denroche RE, Jang GH, Pleasance ED, Shen Y, Karasinska JM, McGhie JP, Gill S, Lim H, Moore MJ, Ng T, Yip S, Zhang W, Sadeghi S, Reisle CR, Mungall AJ, Mungall KL, Moore RA, Ma Y, Knox JJ, Gallinger S, Laskin JJ, Marra MA, Schaeffer DF, Jones SJ, Renouf DJ.

Clin Cancer Res. 2019 May 8. pii: clincanres.0191.2019. doi: 10.1158/1078-0432.CCR-19-0191. [Epub ahead of print]

PMID:
31068372
5.

Size at birth and cognitive ability in late life: A systematic review.

Krishna M, Jones S, Maden M, Du B, Mc R, Kumaran K, Karat SC, Fall CHD.

Int J Geriatr Psychiatry. 2019 May 6. doi: 10.1002/gps.5138. [Epub ahead of print] Review.

PMID:
31056774
6.

Application of a Neural Network Whole Transcriptome-Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers.

Grewal JK, Tessier-Cloutier B, Jones M, Gakkhar S, Ma Y, Moore R, Mungall AJ, Zhao Y, Taylor MD, Gelmon K, Lim H, Renouf D, Laskin J, Marra M, Yip S, Jones SJM.

JAMA Netw Open. 2019 Apr 5;2(4):e192597. doi: 10.1001/jamanetworkopen.2019.2597.

7.

ORCA: A Comprehensive Bioinformatics Container Environment for Education and Research.

Jackman SD, Mozgacheva T, Chen S, O'Huiginn B, Bailey L, Birol I, Jones SJM.

Bioinformatics. 2019 Apr 20. pii: btz278. doi: 10.1093/bioinformatics/btz278. [Epub ahead of print]

PMID:
31004474
8.

Investigation into Micropollutant Removal from Wastewaters by a Membrane Bioreactor.

Kamaz M, Wickramasinghe SR, Eswaranandam S, Zhang W, Jones SM, Watts MJ, Qian X.

Int J Environ Res Public Health. 2019 Apr 16;16(8). pii: E1363. doi: 10.3390/ijerph16081363.

9.

Supporting Self-Management in Bipolar Disorder: Mixed-Methods Knowledge Translation Study.

Michalak EE, Morton E, Barnes SJ, Hole R; CREST.BD, Murray G.

JMIR Ment Health. 2019 Apr 15;6(4):e13493. doi: 10.2196/13493.

10.

Improved measures for evolutionary conservation that exploit taxonomy distances.

Malhis N, Jones SJM, Gsponer J.

Nat Commun. 2019 Apr 5;10(1):1556. doi: 10.1038/s41467-019-09583-2.

11.

RTNsurvival : An R/Bioconductor package for regulatory network survival analysis.

Groeneveld CS, Chagas VS, Jones SJM, Robertson AG, Ponder BAJ, Meyer KB, Castro MAA.

Bioinformatics. 2019 Mar 28. pii: btz229. doi: 10.1093/bioinformatics/btz229. [Epub ahead of print]

PMID:
30923832
12.

Buffering against maladaptive perfectionism in bipolar disorder: The role of self-compassion.

Fletcher K, Yang Y, Johnson SL, Berk M, Perich T, Cotton S, Jones S, Lapsley S, Michalak E, Murray G.

J Affect Disord. 2019 May 1;250:132-139. doi: 10.1016/j.jad.2019.03.003. Epub 2019 Mar 4.

PMID:
30852365
13.

Drug resistance profiling of a new triple negative breast cancer patient-derived xenograft model.

Matossian MD, Burks HE, Elliott S, Hoang VT, Bowles AC, Sabol RA, Wahba B, Anbalagan M, Rowan B, Abazeed ME, Bunnell BA, Moroz K, Miele L, Rhodes LV, Jones SD, Martin EC, Collins-Burow BM, Burow ME.

BMC Cancer. 2019 Mar 7;19(1):205. doi: 10.1186/s12885-019-5401-2.

14.

Base excision repair deficiency signatures implicate germline and somatic MUTYH aberrations in pancreatic ductal adenocarcinoma and breast cancer oncogenesis.

Thibodeau ML, Zhao EY, Reisle C, Ch'ng C, Wong HL, Shen Y, Jones MR, Lim HJ, Young S, Cremin C, Pleasance E, Zhang W, Holt R, Eirew P, Karasinska J, Kalloger SE, Taylor G, Majounie E, Bonakdar M, Zong Z, Bleile D, Chiu R, Birol I, Gelmon K, Lohrisch C, Mungall KL, Mungall AJ, Moore R, Ma YP, Fok A, Yip S, Karsan A, Huntsman D, Schaeffer DF, Laskin J, Marra MA, Renouf DJ, Jones SJM, Schrader KA.

Cold Spring Harb Mol Case Stud. 2019 Apr 1;5(2). pii: a003681. doi: 10.1101/mcs.a003681. Print 2019 Apr.

15.

Mutations in ILK, encoding integrin-linked kinase, are associated with arrhythmogenic cardiomyopathy.

Brodehl A, Rezazadeh S, Williams T, Munsie NM, Liedtke D, Oh T, Ferrier R, Shen Y, Jones SJM, Stiegler AL, Boggon TJ, Duff HJ, Friedman JM, Gibson WT; FORGE Canada Consortium, Childs SJ, Gerull B.

Transl Res. 2019 Jun;208:15-29. doi: 10.1016/j.trsl.2019.02.004. Epub 2019 Feb 15.

PMID:
30802431
16.

A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood.

Pandoh PK, Corbett RD, McDonald H, Alcaide M, Kirk H, Trinh E, Haile S, MacLeod T, Smailus D, Bilobram S, Mungall AJ, Ma Y, Moore RA, Coope R, Zhao Y, Jones SJ, Holt RA, Karsan A, Morin RD, Marra MA.

Biotechniques. 2019 Feb;66(2):85-92. doi: 10.2144/btn-2018-0148.

17.

Integrated Genomic and Functional microRNA Analysis Identifies miR-30-5p as a Tumor Suppressor and Potential Therapeutic Nanomedicine in Head and Neck Cancer.

Saleh AD, Cheng H, Martin SE, Si H, Ormanoglu P, Carlson S, Clavijo PE, Yang X, Das R, Cornelius S, Couper J, Chepeha D, Danilova L, Harris TM, Prystowsky MB, Childs GJ, Smith RV, Robertson AG, Jones SJM, Cherniack AD, Kim SS, Rait A, Pirollo KF, Chang EH, Chen Z, Van Waes C.

Clin Cancer Res. 2019 May 1;25(9):2860-2873. doi: 10.1158/1078-0432.CCR-18-0716. Epub 2019 Feb 5.

PMID:
30723145
18.

Decision-making and risk in bipolar disorder: A quantitative study using fuzzy trace theory.

Sicilia AC, Lukacs JN, Jones S, Perez Algorta G.

Psychol Psychother. 2019 Jan 24. doi: 10.1111/papt.12215. [Epub ahead of print]

PMID:
30677209
19.

Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma.

Grande BM, Gerhard DS, Jiang A, Griner NB, Abramson JS, Alexander TB, Allen H, Ayers LW, Bethony JM, Bhatia K, Bowen J, Casper C, Choi JK, Culibrk L, Davidsen TM, Dyer MA, Gastier-Foster JM, Gesuwan P, Greiner TC, Gross TG, Hanf B, Harris NL, He Y, Irvin JD, Jaffe ES, Jones SJM, Kerchan P, Knoetze N, Leal FE, Lichtenberg TM, Ma Y, Martin JP, Martin MR, Mbulaiteye SM, Mullighan CG, Mungall AJ, Namirembe C, Novik K, Noy A, Ogwang MD, Omoding A, Orem J, Reynolds SJ, Rushton CK, Sandlund JT, Schmitz R, Taylor C, Wilson WH, Wright GW, Zhao EY, Marra MA, Morin RD, Staudt LM.

Blood. 2019 Mar 21;133(12):1313-1324. doi: 10.1182/blood-2018-09-871418. Epub 2019 Jan 7.

20.

Composite acute phase glycoproteins with coronary artery calcification depends on metabolic syndrome presence - The Brazilian Longitudinal Study of Adult Health (ELSA-Brasil).

Harada PH, Benseñor IM, Bittencourt MS, Nasir K, Blaha MJ, Jones SR, Toth PP, Lotufo PA.

J Cardiol. 2019 May;73(5):408-415. doi: 10.1016/j.jjcc.2018.09.006. Epub 2018 Dec 28.

PMID:
30595405

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