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Items: 20

1.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

2.

Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes.

Espínola F, Dionisi HM, Borglin S, Brislawn CJ, Jansson JK, Mac Cormack WP, Carroll J, Sjöling S, Lozada M.

Microb Ecol. 2018 Jan;75(1):123-139. doi: 10.1007/s00248-017-1028-5. Epub 2017 Jul 12.

PMID:
28702706
3.

Prospecting Biotechnologically-Relevant Monooxygenases from Cold Sediment Metagenomes: An In Silico Approach.

Musumeci MA, Lozada M, Rial DV, Mac Cormack WP, Jansson JK, Sjöling S, Carroll J, Dionisi HM.

Mar Drugs. 2017 Apr 9;15(4). pii: E114. doi: 10.3390/md15040114.

4.

Production and characterization of a novel antifungal chitinase identified by functional screening of a suppressive-soil metagenome.

Berini F, Presti I, Beltrametti F, Pedroli M, Vårum KM, Pollegioni L, Sjöling S, Marinelli F.

Microb Cell Fact. 2017 Jan 31;16(1):16. doi: 10.1186/s12934-017-0634-8.

5.

Microbial and viral-like rhodopsins present in coastal marine sediments from four polar and subpolar regions.

López JL, Golemba M, Hernández E, Lozada M, Dionisi H, Jansson JK, Carroll J, Lundgren L, Sjöling S, Mac Cormack WP.

FEMS Microbiol Ecol. 2017 Jan 1;93(1). doi: 10.1093/femsec/fiw216.

PMID:
27815287
6.

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments.

Matos MN, Lozada M, Anselmino LE, Musumeci MA, Henrissat B, Jansson JK, Mac Cormack WP, Carroll J, Sjöling S, Lundgren L, Dionisi HM.

Environ Microbiol. 2016 Dec;18(12):4471-4484. doi: 10.1111/1462-2920.13433. Epub 2016 Jul 18.

PMID:
27348213
7.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

8.

Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments.

Thureborn P, Franzetti A, Lundin D, Sjöling S.

PeerJ. 2016 Jan 19;4:e1593. doi: 10.7717/peerj.1593. eCollection 2016.

9.

Toxigenic Vibrio cholerae identified in estuaries of Tanzania using PCR techniques.

Dalusi L, Lyimo TJ, Lugomela C, Hosea KM, Sjöling S.

FEMS Microbiol Lett. 2015 Mar;362(5). pii: fnv009. doi: 10.1093/femsle/fnv009. Epub 2015 Jan 23.

PMID:
25743072
10.

Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats.

Dealtry S, Ding GC, Weichelt V, Dunon V, Schlüter A, Martini MC, Del Papa MF, Lagares A, Amos GC, Wellington EM, Gaze WH, Sipkema D, Sjöling S, Springael D, Heuer H, van Elsas JD, Thomas C, Smalla K.

PLoS One. 2014 Feb 24;9(2):e89922. doi: 10.1371/journal.pone.0089922. eCollection 2014.

11.

Bacterial chitinase with phytopathogen control capacity from suppressive soil revealed by functional metagenomics.

Hjort K, Presti I, Elväng A, Marinelli F, Sjöling S.

Appl Microbiol Biotechnol. 2014 Mar;98(6):2819-28.

12.

A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities.

Thureborn P, Lundin D, Plathan J, Poole AM, Sjöberg BM, Sjöling S.

PLoS One. 2013 Sep 23;8(9):e74983. doi: 10.1371/journal.pone.0074983. eCollection 2013.

13.

Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada.

Engel K, Ashby D, Brady SF, Cowan DA, Doemer J, Edwards EA, Fiebig K, Martens EC, McCormac D, Mead DA, Miyazaki K, Moreno-Hagelsieb G, O'Gara F, Reid A, Rose DR, Simonet P, Sjöling S, Smalla K, Streit WR, Tedman-Jones J, Valla S, Wellington EM, Wu CC, Liles MR, Neufeld JD, Sessitsch A, Charles TC.

Stand Genomic Sci. 2013 Apr 15;8(1):106-11. doi: 10.4056/sigs.3406845. eCollection 2013 Apr 15.

14.

Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil.

Hjort K, Bergström M, Adesina MF, Jansson JK, Smalla K, Sjöling S.

FEMS Microbiol Ecol. 2010 Feb;71(2):197-207. doi: 10.1111/j.1574-6941.2009.00801.x. Epub 2009 Nov 23.

15.

The metagenomics of disease-suppressive soils - experiences from the METACONTROL project.

van Elsas JD, Costa R, Jansson J, Sjöling S, Bailey M, Nalin R, Vogel TM, van Overbeek L.

Trends Biotechnol. 2008 Nov;26(11):591-601. doi: 10.1016/j.tibtech.2008.07.004. Epub 2008 Sep 4. Review.

PMID:
18774191
16.

Active bacterial community structure along vertical redox gradients in Baltic Sea sediment.

Edlund A, Hårdeman F, Jansson JK, Sjöling S.

Environ Microbiol. 2008 Aug;10(8):2051-63. doi: 10.1111/j.1462-2920.2008.01624.x. Epub 2008 Apr 29.

PMID:
18452546
17.

An examination of governance arrangements at Kisakasaka mangrove reserve in Zanzibar.

Saunders F, Mohammed SM, Jiddawi N, Sjöling S.

Environ Manage. 2008 May;41(5):663-75.

PMID:
18046601
18.
19.

Microbial community structure in polluted Baltic Sea sediments.

Edlund A, Soule T, Sjöling S, Jansson JK.

Environ Microbiol. 2006 Feb;8(2):223-32.

PMID:
16423011
20.

High 16S rDNA bacterial diversity in glacial meltwater lake sediment, Bratina Island, Antarctica.

Sjöling S, Cowan DA.

Extremophiles. 2003 Aug;7(4):275-82. Epub 2003 Apr 9.

PMID:
12910387

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