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Items: 9

1.

Selection, Succession, and Stabilization of Soil Microbial Consortia.

Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC.

mSystems. 2019 May 14;4(4). pii: e00055-19. doi: 10.1128/mSystems.00055-19. eCollection 2019 Jul-Aug.

PMID:
31098394
2.

Improving network inference algorithms using resampling methods.

Colby SM, McClure RS, Overall CC, Renslow RS, McDermott JE.

BMC Bioinformatics. 2018 Oct 12;19(1):376. doi: 10.1186/s12859-018-2402-0.

3.

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS.

ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24.

PMID:
29795448
4.

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture.

Khan N, Maezato Y, McClure RS, Brislawn CJ, Mobberley JM, Isern N, Chrisler WB, Markillie LM, Barney BM, Song HS, Nelson WC, Bernstein HC.

Sci Rep. 2018 Jan 10;8(1):297. doi: 10.1038/s41598-017-18630-1.

5.

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership.

Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS.

mSystems. 2017 Mar 7;2(2). pii: e00181-16. doi: 10.1128/mSystems.00181-16. eCollection 2017 Mar-Apr.

6.

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS.

Nucleic Acids Res. 2016 Oct 14;44(18):8810-8825. Epub 2016 Aug 27.

7.

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth.

Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS.

MBio. 2016 Jul 26;7(4). pii: e00949-16. doi: 10.1128/mBio.00949-16.

8.

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142.

Bernstein HC, Charania MA, McClure RS, Sadler NC, Melnicki MR, Hill EA, Markillie LM, Nicora CD, Wright AT, Romine MF, Beliaev AS.

Sci Rep. 2015 Nov 3;5:16004. doi: 10.1038/srep16004.

9.

Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality.

Song HS, McClure RS, Bernstein HC, Overall CC, Hill EA, Beliaev AS.

Life (Basel). 2015 Mar 27;5(2):1127-40. doi: 10.3390/life5021127.

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