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Items: 19

1.

The draft assembly of the radically organized Stylonychia lemnae macronuclear genome.

Aeschlimann SH, J├Ânsson F, Postberg J, Stover NA, Petera RL, Lipps HJ, Nowacki M, Swart EC.

Genome Biol Evol. 2014 Jun 20;6(7):1707-23. doi: 10.1093/gbe/evu139.

2.

Immediate dissemination of student discoveries to a model organism database enhances classroom-based research experiences.

Wiley EA, Stover NA.

CBE Life Sci Educ. 2014 Spring;13(1):131-8. doi: 10.1187/cbe.13-07-0140.

3.

The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF.

PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473. Epub 2013 Jan 29.

4.

Whole genome studies of Tetrahymena.

Coyne RS, Stover NA, Miao W.

Methods Cell Biol. 2012;109:53-81. doi: 10.1016/B978-0-12-385967-9.00004-9.

PMID:
22444143
5.

Tetrahymena Genome Database Wiki: a community-maintained model organism database.

Stover NA, Punia RS, Bowen MS, Dolins SB, Clark TG.

Database (Oxford). 2012 Mar 20;2012:bas007. doi: 10.1093/database/bas007. Print 2012.

6.

Trichothecenes: from simple to complex mycotoxins.

McCormick SP, Stanley AM, Stover NA, Alexander NJ.

Toxins (Basel). 2011 Jul;3(7):802-14. doi: 10.3390/toxins3070802. Epub 2011 Jul 1. Review.

7.

Multiple independent fusions of glucose-6-phosphate dehydrogenase with enzymes in the pentose phosphate pathway.

Stover NA, Dixon TA, Cavalcanti AR.

PLoS One. 2011;6(8):e22269. doi: 10.1371/journal.pone.0022269. Epub 2011 Aug 1.

8.

Detection of fused genes in eukaryotic genomes using gene deFuser: analysis of the Tetrahymena thermophila genome.

Salim HM, Koire AM, Stover NA, Cavalcanti AR.

BMC Bioinformatics. 2011 Jul 11;12:279. doi: 10.1186/1471-2105-12-279.

9.

Distinct cyclin genes define each stage of ciliate conjugation.

Stover NA, Rice JD.

Cell Cycle. 2011 May 15;10(10):1699-701. Epub 2011 May 15. No abstract available.

10.

Genome evolution: a double take for Paramecium.

Chalker DL, Stover NA.

Curr Biol. 2007 Feb 6;17(3):R97-9.

11.

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E.

PLoS Biol. 2006 Sep;4(9):e286.

12.

On the paucity of duplicated genes in Caenorhabditis elegans operons.

Cavalcanti AR, Stover NA, Landweber LF.

J Mol Evol. 2006 Jun;62(6):765-71. Epub 2006 Apr 28.

PMID:
16752214
13.

Spliced leader trans-splicing.

Stover NA, Kaye MS, Cavalcanti AR.

Curr Biol. 2006 Jan 10;16(1):R8-9. No abstract available.

14.

Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research.

Stover NA, Krieger CJ, Binkley G, Dong Q, Fisk DG, Nash R, Sethuraman A, Weng S, Cherry JM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D500-3.

15.

Reciprocal fusions of two genes in the formaldehyde detoxification pathway in ciliates and diatoms.

Stover NA, Cavalcanti AR, Li AJ, Richardson BC, Landweber LF.

Mol Biol Evol. 2005 Jul;22(7):1539-42. Epub 2005 Apr 27. Erratum in: Mol Biol Evol. 2005 Aug;22(8):1749.

PMID:
15858209
16.
17.

Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project.

Cavalcanti AR, Stover NA, Orecchia L, Doak TG, Landweber LF.

Chromosoma. 2004 Sep;113(2):69-76. Epub 2004 Jul 16.

PMID:
15258807
18.

Probable horizontal transfer of a gene between a protist and a cnidarian.

Steele RE, Hampson SE, Stover NA, Kibler DF, Bode HR.

Curr Biol. 2004 Apr 20;14(8):R298-9. No abstract available.

19.

Sequencing the Oxytricha trifallax macronuclear genome: a pilot project.

Doak TG, Cavalcanti AR, Stover NA, Dunn DM, Weiss R, Herrick G, Landweber LF.

Trends Genet. 2003 Nov;19(11):603-7. No abstract available.

PMID:
14585610

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