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ATP, Mg2+, Nuclear Phase Separation, and Genome Accessibility.

Wright RHG, Le Dily F, Beato M.

Trends Biochem Sci. 2019 May 6. pii: S0968-0004(19)30053-2. doi: 10.1016/j.tibs.2019.03.001. [Epub ahead of print] Review.


Hormone-control regions mediate steroid receptor-dependent genome organization.

Le Dily F, Vidal E, Cuartero Y, Quilez J, Nacht AS, Vicent GP, Carbonell-Caballero J, Sharma P, Villanueva-Cañas JL, Ferrari R, De Llobet LI, Verde G, Wright RHG, Beato M.

Genome Res. 2019 Jan;29(1):29-39. doi: 10.1101/gr.243824.118. Epub 2018 Dec 14.


Rapid reversible changes in compartments and local chromatin organization revealed by hyperosmotic shock.

Amat R, Böttcher R, Le Dily F, Vidal E, Quilez J, Cuartero Y, Beato M, de Nadal E, Posas F.

Genome Res. 2019 Jan;29(1):18-28. doi: 10.1101/gr.238527.118. Epub 2018 Dec 6.


Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription.

Sharma P, Lioutas A, Fernandez-Fuentes N, Quilez J, Carbonell-Caballero J, Wright RHG, Di Vona C, Le Dily F, Schüller R, Eick D, Oliva B, Beato M.

Mol Cell. 2019 Jan 3;73(1):84-96.e7. doi: 10.1016/j.molcel.2018.10.016. Epub 2018 Nov 21.


Unliganded Progesterone Receptor Governs Estrogen Receptor Gene Expression by Regulating DNA Methylation in Breast Cancer Cells.

Verde G, De Llobet LI, Wright RHG, Quilez J, Peiró S, Le Dily F, Beato M.

Cancers (Basel). 2018 Oct 5;10(10). pii: E371. doi: 10.3390/cancers10100371.


Chromatin remodeling in Drosophila preblastodermic embryo extract.

Šatović E, Font-Mateu J, Carbonell A, Beato M, Azorín F.

Sci Rep. 2018 Jul 19;8(1):10927. doi: 10.1038/s41598-018-29129-8.


Daughter-cell-specific modulation of nuclear pore complexes controls cell cycle entry during asymmetric division.

Kumar A, Sharma P, Gomar-Alba M, Shcheprova Z, Daulny A, Sanmartín T, Matucci I, Funaya C, Beato M, Mendoza M.

Nat Cell Biol. 2018 Apr;20(4):432-442. doi: 10.1038/s41556-018-0056-9. Epub 2018 Mar 12.


OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes.

Vidal E, le Dily F, Quilez J, Stadhouders R, Cuartero Y, Graf T, Marti-Renom MA, Beato M, Filion GJ.

Nucleic Acids Res. 2018 May 4;46(8):e49. doi: 10.1093/nar/gky064.


Signaling by Steroid Hormones in the 3D Nuclear Space.

Le Dily F, Beato M.

Int J Mol Sci. 2018 Jan 23;19(2). pii: E306. doi: 10.3390/ijms19020306. Review.


Targeted NUDT5 inhibitors block hormone signaling in breast cancer cells.

Page BDG, Valerie NCK, Wright RHG, Wallner O, Isaksson R, Carter M, Rudd SG, Loseva O, Jemth AS, Almlöf I, Font-Mateu J, Llona-Minguez S, Baranczewski P, Jeppsson F, Homan E, Almqvist H, Axelsson H, Regmi S, Gustavsson AL, Lundbäck T, Scobie M, Strömberg K, Stenmark P, Beato M, Helleday T.

Nat Commun. 2018 Jan 17;9(1):250. doi: 10.1038/s41467-017-02293-7.


Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.

Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti-Renom MA, Graf T.

Nat Genet. 2018 Feb;50(2):238-249. doi: 10.1038/s41588-017-0030-7. Epub 2018 Jan 15.


Parallel sequencing lives, or what makes large sequencing projects successful.

Quilez J, Vidal E, Dily FL, Serra F, Cuartero Y, Stadhouders R, Graf T, Marti-Renom MA, Beato M, Filion G.

Gigascience. 2017 Nov 1;6(11):1-6. doi: 10.1093/gigascience/gix100.


Insight into the machinery that oils chromatin dynamics.

Wright RH, Fernandez-Fuentes N, Oliva B, Beato M.

Nucleus. 2016 Nov;7(6):532-539. doi: 10.1080/19491034.2016.1255392. Epub 2016 Nov 28. Review.


Steroid hormone receptors silence genes by a chromatin-targeted mechanism similar to those used for gene activation.

Nacht AS, Beato M, Vicent GP.

Transcription. 2017 Jan;8(1):15-20. doi: 10.1080/21541264.2016.1242456. Epub 2016 Oct 4.


Hormone-induced repression of genes requires BRG1-mediated H1.2 deposition at target promoters.

Nacht AS, Pohl A, Zaurin R, Soronellas D, Quilez J, Sharma P, Wright RH, Beato M, Vicent GP.

EMBO J. 2016 Aug 15;35(16):1822-43. doi: 10.15252/embj.201593260. Epub 2016 Jul 7.


ADP-ribose-derived nuclear ATP synthesis by NUDIX5 is required for chromatin remodeling.

Wright RH, Lioutas A, Le Dily F, Soronellas D, Pohl A, Bonet J, Nacht AS, Samino S, Font-Mateu J, Vicent GP, Wierer M, Trabado MA, Schelhorn C, Carolis C, Macias MJ, Yanes O, Oliva B, Beato M.

Science. 2016 Jun 3;352(6290):1221-5. doi: 10.1126/science.aad9335.


Chromatin and RNA Maps Reveal Regulatory Long Noncoding RNAs in Mouse.

Bogu GK, Vizán P, Stanton LW, Beato M, Di Croce L, Marti-Renom MA.

Mol Cell Biol. 2015 Dec 28;36(5):809-19. doi: 10.1128/MCB.00955-15.


3D genome structure. Organization of the nucleus in space and time.

Filion GJ, Beato M.

FEBS Lett. 2015 Oct 7;589(20 Pt A):2867-8. doi: 10.1016/j.febslet.2015.09.003. Epub 2015 Sep 9. No abstract available.


C/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and Myelopoiesis.

van Oevelen C, Collombet S, Vicent G, Hoogenkamp M, Lepoivre C, Badeaux A, Bussmann L, Sardina JL, Thieffry D, Beato M, Shi Y, Bonifer C, Graf T.

Stem Cell Reports. 2015 Aug 11;5(2):232-47. doi: 10.1016/j.stemcr.2015.06.007. Epub 2015 Jul 30.


Corrigendum: Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells.

Iannone C, Pohl A, Papasaikas P, Soronellas D, Vicent GP, Beato M, Valcárcel J.

RNA. 2015 Jul;21(7):1390. No abstract available.

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