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Items: 1 to 20 of 38

1.

Transcriptional and Metabolomic Analyses Indicate that Cell Wall Properties are Associated with Drought Tolerance in Brachypodium distachyon.

Lenk I, Fisher LHC, Vickers M, Akinyemi A, Didion T, Swain M, Jensen CS, Mur LAJ, Bosch M.

Int J Mol Sci. 2019 Apr 10;20(7). pii: E1758. doi: 10.3390/ijms20071758.

2.

Evolutionary genomics of anthroponosis in Cryptosporidium.

Nader JL, Mathers TC, Ward BJ, Pachebat JA, Swain MT, Robinson G, Chalmers RM, Hunter PR, van Oosterhout C, Tyler KM.

Nat Microbiol. 2019 May;4(5):826-836. doi: 10.1038/s41564-019-0377-x. Epub 2019 Mar 4.

PMID:
30833731
3.

The importance of extracellular vesicle purification for downstream analysis: A comparison of differential centrifugation and size exclusion chromatography for helminth pathogens.

Davis CN, Phillips H, Tomes JJ, Swain MT, Wilkinson TJ, Brophy PM, Morphew RM.

PLoS Negl Trop Dis. 2019 Feb 27;13(2):e0007191. doi: 10.1371/journal.pntd.0007191. eCollection 2019 Feb.

4.

Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1.

Sengupta K, Swain MT, Livingstone PG, Whitworth DE, Saha P.

Front Microbiol. 2019 Jan 4;9:3209. doi: 10.3389/fmicb.2018.03209. eCollection 2018.

5.

Polyomic tools for an emerging livestock parasite, the rumen fluke Calicophoron daubneyi; identifying shifts in rumen functionality.

Huson KM, Morphew RM, Allen NR, Hegarty MJ, Worgan HJ, Girdwood SE, Jones EL, Phillips HC, Vickers M, Swain M, Smith D, Kingston-Smith AH, Brophy PM.

Parasit Vectors. 2018 Dec 4;11(1):617. doi: 10.1186/s13071-018-3225-6.

6.

Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas.

Oliphant A, Alexander JL, Swain MT, Webster SG, Wilcockson DC.

BMC Genomics. 2018 Sep 26;19(1):711. doi: 10.1186/s12864-018-5057-3.

7.

Corrigendum to 'the anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities' [Int. J. Parasitol. Drugs and Drug Resist. 8 (2018) 213-222].

Geyer KK, Munshi SE, Vickers M, Squance M, Wilkinson TJ, Berrar D, Chaparro C, Swain MT, Hoffmann KF.

Int J Parasitol Drugs Drug Resist. 2018 Dec;8(3):493. doi: 10.1016/j.ijpddr.2018.07.002. Epub 2018 Jul 17. No abstract available.

8.

Identification of Stipules reduced, a leaf morphology gene in pea (Pisum sativum).

Moreau C, Hofer JMI, Eléouët M, Sinjushin A, Ambrose M, Skøt K, Blackmore T, Swain M, Hegarty M, Balanzà V, Ferrándiz C, Ellis THN.

New Phytol. 2018 Oct;220(1):288-299. doi: 10.1111/nph.15286. Epub 2018 Jul 5.

PMID:
29974468
9.

The anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities.

Geyer KK, Munshi SE, Vickers M, Squance M, Wilkinson TJ, Berrar D, Chaparro C, Swain MT, Hoffmann KF.

Int J Parasitol Drugs Drug Resist. 2018 Aug;8(2):213-222. doi: 10.1016/j.ijpddr.2018.03.006. Epub 2018 Apr 1. Erratum in: Int J Parasitol Drugs Drug Resist. 2018 Jul 17;:.

10.

Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages.

Almpanis A, Swain M, Gatherer D, McEwan N.

Microb Genom. 2018 Apr 10. doi: 10.1099/mgen.0.000168. [Epub ahead of print]

11.

G-Anchor: a novel approach for whole-genome comparative mapping utilizing evolutionary conserved DNA sequences.

Lenis VPE, Swain M, Larkin DM.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy017.

12.

Transcriptional changes when Myxococcus xanthus preys on Escherichia coli suggest myxobacterial predators are constitutively toxic but regulate their feeding.

Livingstone PG, Millard AD, Swain MT, Whitworth DE.

Microb Genom. 2018 Jan 18. doi: 10.1099/mgen.0.000152. [Epub ahead of print]

13.

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, Di Stefano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TAL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 Aug 23;8:16153. doi: 10.1038/ncomms16153.

14.

The Biomphalaria glabrata DNA methylation machinery displays spatial tissue expression, is differentially active in distinct snail populations and is modulated by interactions with Schistosoma mansoni.

Geyer KK, Niazi UH, Duval D, Cosseau C, Tomlinson C, Chalmers IW, Swain MT, Cutress DJ, Bickham-Wright U, Munshi SE, Grunau C, Yoshino TP, Hoffmann KF.

PLoS Negl Trop Dis. 2017 May 16;11(5):e0005246. doi: 10.1371/journal.pntd.0005246. eCollection 2017 May.

15.

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, di Stephano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 May 16;8:15451. doi: 10.1038/ncomms15451. Erratum in: Nat Commun. 2017 Aug 23;8:16153.

16.

Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set.

Damas J, O'Connor R, Farré M, Lenis VPE, Martell HJ, Mandawala A, Fowler K, Joseph S, Swain MT, Griffin DK, Larkin DM.

Genome Res. 2017 May;27(5):875-884. doi: 10.1101/gr.213660.116. Epub 2016 Nov 30.

17.

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

Bioinformatics. 2016 Nov 1;32(21):3339-3341. Epub 2016 Jul 4.

PMID:
27378293
18.

Identification and temporal expression of putative circadian clock transcripts in the amphipod crustacean Talitrus saltator.

O'Grady JF, Hoelters LS, Swain MT, Wilcockson DC.

PeerJ. 2016 Oct 5;4:e2555. eCollection 2016.

19.

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia.

Mora-Ortiz M, Swain MT, Vickers MJ, Hegarty MJ, Kelly R, Smith LM, Skøt L.

BMC Genomics. 2016 Sep 26;17(1):756.

20.

DISMISS: detection of stranded methylation in MeDIP-Seq data.

Niazi U, Geyer KK, Vickers MJ, Hoffmann KF, Swain MT.

BMC Bioinformatics. 2016 Jul 29;17(1):295. doi: 10.1186/s12859-016-1158-7.

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