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Items: 1 to 20 of 70

1.

Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis.

Peter S, Hölzer M, Lamkiewic K, di Fenizio PS, Al Hwaeer H, Marz M, Schuster S, Dittrich P, Ibrahim B.

Viruses. 2019 May 16;11(5). pii: E449. doi: 10.3390/v11050449.

2.

De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.

Hölzer M, Marz M.

Gigascience. 2019 May 1;8(5). pii: giz039. doi: 10.1093/gigascience/giz039.

3.

The Third Annual Meeting of the European Virus Bioinformatics Center.

Hufsky F, Ibrahim B, Modha S, Clokie MRJ, Deinhardt-Emmer S, Dutilh BE, Lycett S, Simmonds P, Thiel V, Abroi A, Adriaenssens EM, Escalera-Zamudio M, Kelly JN, Lamkiewicz K, Lu L, Susat J, Sicheritz T, Robertson DL, Marz M.

Viruses. 2019 May 5;11(5). pii: E420. doi: 10.3390/v11050420.

4.

Erratum for Wegner et al., "Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon".

Wegner CE, Gaspar M, Geesink P, Herrmann M, Marz M, Küsel K.

Appl Environ Microbiol. 2019 Apr 18;85(9). pii: e00502-19. doi: 10.1128/AEM.00502-19. Print 2019 May 1. No abstract available.

5.

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling.

Gerresheim GK, Bathke J, Michel AM, Andreev DE, Shalamova LA, Rossbach O, Hu P, Glebe D, Fricke M, Marz M, Goesmann A, Kiniry SJ, Baranov PV, Shatsky IN, Niepmann M.

Int J Mol Sci. 2019 Mar 15;20(6). pii: E1321. doi: 10.3390/ijms20061321.

6.

Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon.

Wegner CE, Gaspar M, Geesink P, Herrmann M, Marz M, Küsel K.

Appl Environ Microbiol. 2019 Feb 20;85(5). pii: e02346-18. doi: 10.1128/AEM.02346-18. Print 2019 Mar 1. Erratum in: Appl Environ Microbiol. 2019 Apr 18;85(9):.

PMID:
30578263
7.

Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation.

Chen Z, Amro EM, Becker F, Hölzer M, Rasa SMM, Njeru SN, Han B, Di Sanzo S, Chen Y, Tang D, Tao S, Haenold R, Groth M, Romanov VS, Kirkpatrick JM, Kraus JM, Kestler HA, Marz M, Ori A, Neri F, Morita Y, Rudolph KL.

J Exp Med. 2019 Jan 7;216(1):152-175. doi: 10.1084/jem.20181505. Epub 2018 Dec 7.

8.

SilentMutations (SIM): A tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs.

Desirò D, Hölzer M, Ibrahim B, Marz M.

Virus Res. 2019 Jan 15;260:135-141. doi: 10.1016/j.virusres.2018.11.005. Epub 2018 Nov 12.

PMID:
30439394
9.

Global importance of RNA secondary structures in protein-coding sequences.

Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M.

Bioinformatics. 2019 Feb 15;35(4):579-583. doi: 10.1093/bioinformatics/bty678.

PMID:
30101307
10.

Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M.

Viruses. 2018 May 14;10(5). pii: E256. doi: 10.3390/v10050256.

11.

A new era of virus bioinformatics.

Ibrahim B, McMahon DP, Hufsky F, Beer M, Deng L, Mercier PL, Palmarini M, Thiel V, Marz M.

Virus Res. 2018 Jun 2;251:86-90. doi: 10.1016/j.virusres.2018.05.009. Epub 2018 May 8. Review.

PMID:
29751021
12.

Virologists-Heroes need weapons.

Hufsky F, Ibrahim B, Beer M, Deng L, Mercier PL, McMahon DP, Palmarini M, Thiel V, Marz M.

PLoS Pathog. 2018 Feb 8;14(2):e1006771. doi: 10.1371/journal.ppat.1006771. eCollection 2018 Feb. No abstract available.

13.

Multiple Roots of Fruiting Body Formation in Amoebozoa.

Hillmann F, Forbes G, Novohradská S, Ferling I, Riege K, Groth M, Westermann M, Marz M, Spaller T, Winckler T, Schaap P, Glöckner G.

Genome Biol Evol. 2018 Feb 1;10(2):591-606. doi: 10.1093/gbe/evy011.

14.

Effects of allelic variations in the human myxovirus resistance protein A on its antiviral activity.

Graf L, Dick A, Sendker F, Barth E, Marz M, Daumke O, Kochs G.

J Biol Chem. 2018 Mar 2;293(9):3056-3072. doi: 10.1074/jbc.M117.812784. Epub 2018 Jan 12.

15.

Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions.

Madhugiri R, Karl N, Petersen D, Lamkiewicz K, Fricke M, Wend U, Scheuer R, Marz M, Ziebuhr J.

Virology. 2018 Apr;517:44-55. doi: 10.1016/j.virol.2017.11.025. Epub 2017 Dec 6.

16.

Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".

Hölzer M, Marz M.

Adv Virus Res. 2017;99:233-257. doi: 10.1016/bs.aivir.2017.08.004. Epub 2017 Sep 28.

PMID:
29029728
17.

A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri.

Baumgart M, Barth E, Savino A, Groth M, Koch P, Petzold A, Arisi I, Platzer M, Marz M, Cellerino A.

BMC Genomics. 2017 Sep 5;18(1):693. doi: 10.1186/s12864-017-3951-8.

18.

Complete Genome Sequence of JII-1961, a Bovine Mycobacterium avium subsp. paratuberculosis Field Isolate from Germany.

Möbius P, Nordsiek G, Hölzer M, Jarek M, Marz M, Köhler H.

Genome Announc. 2017 Aug 24;5(34). pii: e00870-17. doi: 10.1128/genomeA.00870-17.

19.

Evolution and Antiviral Specificities of Interferon-Induced Mx Proteins of Bats against Ebola, Influenza, and Other RNA Viruses.

Fuchs J, Hölzer M, Schilling M, Patzina C, Schoen A, Hoenen T, Zimmer G, Marz M, Weber F, Müller MA, Kochs G.

J Virol. 2017 Jul 12;91(15). pii: e00361-17. doi: 10.1128/JVI.00361-17. Print 2017 Aug 1.

20.

Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.

Riege K, Hölzer M, Klassert TE, Barth E, Bräuer J, Collatz M, Hufsky F, Mostajo N, Stock M, Vogel B, Slevogt H, Marz M.

Sci Rep. 2017 Jan 17;7:40598. doi: 10.1038/srep40598.

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