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Using long-read sequencing to detect imprinted DNA methylation.

Gigante S, Gouil Q, Lucattini A, Keniry A, Beck T, Tinning M, Gordon L, Woodruff C, Speed TP, Blewitt ME, Ritchie ME.

Nucleic Acids Res. 2019 Feb 22. pii: gkz107. doi: 10.1093/nar/gkz107. [Epub ahead of print]


De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome.

Huerlimann R, Wade NM, Gordon L, Montenegro JD, Goodall J, McWilliam S, Tinning M, Siemering K, Giardina E, Donovan D, Sellars MJ, Cowley JA, Condon K, Coman GJ, Khatkar MS, Raadsma HW, Maes GE, Zenger KR, Jerry DR.

Sci Rep. 2018 Sep 10;8(1):13553. doi: 10.1038/s41598-018-31148-4.


Ultraviolet Irradiation of Skin Alters the Faecal Microbiome Independently of Vitamin D in Mice.

Ghaly S, Kaakoush NO, Lloyd F, Gordon L, Forest C, Lawrance IC, Hart PH.

Nutrients. 2018 Aug 11;10(8). pii: E1069. doi: 10.3390/nu10081069.


Human fetoplacental arterial and venous endothelial cells are differentially programmed by gestational diabetes mellitus, resulting in cell-specific barrier function changes.

Cvitic S, Novakovic B, Gordon L, Ulz CM, Mühlberger M, Diaz-Perez FI, Joo JE, Svendova V, Schimek MG, Trajanoski S, Saffery R, Desoye G, Hiden U.

Diabetologia. 2018 Nov;61(11):2398-2411. doi: 10.1007/s00125-018-4699-7. Epub 2018 Aug 8.


High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis.

Ghaly S, Kaakoush NO, Lloyd F, McGonigle T, Mok D, Baird A, Klopcic B, Gordon L, Gorman S, Forest C, Bouillon R, Lawrance IC, Hart PH.

Sci Rep. 2018 Jul 31;8(1):11511. doi: 10.1038/s41598-018-29759-y.


Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling.

Pal B, Chen Y, Vaillant F, Jamieson P, Gordon L, Rios AC, Wilcox S, Fu N, Liu KH, Jackling FC, Davis MJ, Lindeman GJ, Smyth GK, Visvader JE.

Nat Commun. 2017 Nov 20;8(1):1627. doi: 10.1038/s41467-017-01560-x.


Haplotyping the human leukocyte antigen system from single chromosomes.

Murphy NM, Burton M, Powell DR, Rossello FJ, Cooper D, Chopra A, Hsieh MJ, Sayer DC, Gordon L, Pertile MD, Tait BD, Irving HR, Pouton CW.

Sci Rep. 2016 Jul 27;6:30381. doi: 10.1038/srep30381.


Transcriptional profiling of the postnatal brain of the Ts1Cje mouse model of Down syndrome.

Tan KL, Ling KH, Hewitt CA, Cheah PS, Simpson K, Gordon L, Pritchard MA, Smyth GK, Thomas T, Scott HS.

Genom Data. 2014 Oct 2;2:314-7. doi: 10.1016/j.gdata.2014.09.009. eCollection 2014 Dec.


Time for a standardized system of reporting sites of genomic methylation.

Saffery R, Gordon L.

Genome Biol. 2015 Apr 30;16:85. doi: 10.1186/s13059-015-0654-9.


Chorioamnionitis Occurring in Women With Preterm Rupture of the Fetal Membranes Is Associated With a Dynamic Increase in mRNAs Coding Cytokines in the Maternal Circulation.

Stock O, Gordon L, Kapoor J, Walker SP, Whitehead C, Kaitu'u-Lino TJ, Pell G, Hannan NJ, Tong S.

Reprod Sci. 2015 Jul;22(7):852-9. doi: 10.1177/1933719114565034. Epub 2015 Jan 23.


Copy number variation associated with meiotic arrest in idiopathic male infertility.

Eggers S, DeBoer KD, van den Bergen J, Gordon L, White SJ, Jamsai D, McLachlan RI, Sinclair AH, O'Bryan MK.

Fertil Steril. 2015 Jan;103(1):214-9. doi: 10.1016/j.fertnstert.2014.09.030. Epub 2014 Oct 25.


The oncogenic properties of EWS/WT1 of desmoplastic small round cell tumors are unmasked by loss of p53 in murine embryonic fibroblasts.

Bandopadhayay P, Jabbour AM, Riffkin C, Salmanidis M, Gordon L, Popovski D, Rigby L, Ashley DM, Watkins DN, Thomas DM, Algar E, Ekert PG.

BMC Cancer. 2013 Dec 9;13:585. doi: 10.1186/1471-2407-13-585.


Variable promoter methylation contributes to differential expression of key genes in human placenta-derived venous and arterial endothelial cells.

Joo JE, Hiden U, Lassance L, Gordon L, Martino DJ, Desoye G, Saffery R.

BMC Genomics. 2013 Jul 15;14:475. doi: 10.1186/1471-2164-14-475.


Longitudinal, genome-scale analysis of DNA methylation in twins from birth to 18 months of age reveals rapid epigenetic change in early life and pair-specific effects of discordance.

Martino D, Loke YJ, Gordon L, Ollikainen M, Cruickshank MN, Saffery R, Craig JM.

Genome Biol. 2013 May 22;14(5):R42. doi: 10.1186/gb-2013-14-5-r42.


The Peri/postnatal Epigenetic Twins Study (PETS).

Loke YJ, Novakovic B, Ollikainen M, Wallace EM, Umstad MP, Permezel M, Morley R, Ponsonby AL, Gordon L, Galati JC, Saffery R, Craig JM.

Twin Res Hum Genet. 2013 Feb;16(1):13-20. doi: 10.1017/thg.2012.114. Epub 2012 Nov 22.


Genome-scale case-control analysis of CD4+ T-cell DNA methylation in juvenile idiopathic arthritis reveals potential targets involved in disease.

Ellis JA, Munro JE, Chavez RA, Gordon L, Joo JE, Akikusa JD, Allen RC, Ponsonby AL, Craig JM, Saffery R.

Clin Epigenetics. 2012 Nov 13;4(1):20. doi: 10.1186/1868-7083-4-20.


Glucose as a fetal nutrient: dynamic regulation of several glucose transporter genes by DNA methylation in the human placenta across gestation.

Novakovic B, Gordon L, Robinson WP, Desoye G, Saffery R.

J Nutr Biochem. 2013 Jan;24(1):282-8. doi: 10.1016/j.jnutbio.2012.06.006. Epub 2012 Aug 15.


Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence.

Gordon L, Joo JE, Powell JE, Ollikainen M, Novakovic B, Li X, Andronikos R, Cruickshank MN, Conneely KN, Smith AK, Alisch RS, Morley R, Visscher PM, Craig JM, Saffery R.

Genome Res. 2012 Aug;22(8):1395-406. doi: 10.1101/gr.136598.111. Epub 2012 Jul 16.


SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips.

Maksimovic J, Gordon L, Oshlack A.

Genome Biol. 2012 Jun 15;13(6):R44. doi: 10.1186/gb-2012-13-6-r44.


p53-Dependent transcriptional responses to interleukin-3 signaling.

Jabbour AM, Gordon L, Daunt CP, Green BD, Kok CH, D'Andrea R, Ekert PG.

PLoS One. 2012;7(2):e31428. doi: 10.1371/journal.pone.0031428. Epub 2012 Feb 14.

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