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Items: 11

1.

A Smart Imaging Workflow for Organ-Specific Screening in a Cystic Kidney Zebrafish Disease Model.

Pandey G, Westhoff JH, Schaefer F, Gehrig J.

Int J Mol Sci. 2019 Mar 14;20(6). pii: E1290. doi: 10.3390/ijms20061290.

2.

Zebrafish as a Model for Drug Screening in Genetic Kidney Diseases.

Gehrig J, Pandey G, Westhoff JH.

Front Pediatr. 2018 Jun 28;6:183. doi: 10.3389/fped.2018.00183. eCollection 2018. Review.

3.

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome.

Basu S, Hadzhiev Y, Petrosino G, Nepal C, Gehrig J, Armant O, Ferg M, Strahle U, Sanges R, Müller F.

Sci Rep. 2016 Sep 15;6:33210. doi: 10.1038/srep33210.

4.

Description of embryonic development of spotted green pufferfish (Tetraodon nigroviridis).

Zaucker A, Bodur T, Roest Crollius H, Hadzhiev Y, Gehrig J, Loosli F, Watson C, Müller F.

Zebrafish. 2014 Dec;11(6):509-17. doi: 10.1089/zeb.2014.0984.

5.

Generation of orientation tools for automated zebrafish screening assays using desktop 3D printing.

Wittbrodt JN, Liebel U, Gehrig J.

BMC Biotechnol. 2014 May 1;14:36. doi: 10.1186/1472-6750-14-36.

6.

Two independent transcription initiation codes overlap on vertebrate core promoters.

Haberle V, Li N, Hadzhiev Y, Plessy C, Previti C, Nepal C, Gehrig J, Dong X, Akalin A, Suzuki AM, van IJcken WFJ, Armant O, Ferg M, Strähle U, Carninci P, Müller F, Lenhard B.

Nature. 2014 Mar 20;507(7492):381-385. doi: 10.1038/nature12974. Epub 2014 Feb 16.

7.

Development of an automated imaging pipeline for the analysis of the zebrafish larval kidney.

Westhoff JH, Giselbrecht S, Schmidts M, Schindler S, Beales PL, Tönshoff B, Liebel U, Gehrig J.

PLoS One. 2013 Dec 4;8(12):e82137. doi: 10.1371/journal.pone.0082137. eCollection 2013.

8.

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis.

Nepal C, Hadzhiev Y, Previti C, Haberle V, Li N, Takahashi H, Suzuki AM, Sheng Y, Abdelhamid RF, Anand S, Gehrig J, Akalin A, Kockx CE, van der Sloot AA, van Ijcken WF, Armant O, Rastegar S, Watson C, Strähle U, Stupka E, Carninci P, Lenhard B, Müller F.

Genome Res. 2013 Nov;23(11):1938-50. doi: 10.1101/gr.153692.112. Epub 2013 Sep 3.

9.

Automated feature detection and imaging for high-resolution screening of zebrafish embryos.

Peravali R, Gehrig J, Giselbrecht S, Lütjohann DS, Hadzhiev Y, Müller F, Liebel U.

Biotechniques. 2011 May;50(5):319-24. doi: 10.2144/000113669.

10.

Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos.

Gehrig J, Reischl M, Kalmár E, Ferg M, Hadzhiev Y, Zaucker A, Song C, Schindler S, Liebel U, Müller F.

Nat Methods. 2009 Dec;6(12):911-6. doi: 10.1038/nmeth.1396. Epub 2009 Nov 8.

PMID:
19898487
11.

The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish.

Ferg M, Sanges R, Gehrig J, Kiss J, Bauer M, Lovas A, Szabo M, Yang L, Straehle U, Pankratz MJ, Olasz F, Stupka E, Müller F.

EMBO J. 2007 Sep 5;26(17):3945-56. Epub 2007 Aug 16.

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