Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 21

1.

Computational Modeling and Analysis of Microarray Data: New Horizons.

Ruskin HJ.

Microarrays (Basel). 2016 Oct 21;5(4). pii: E26.

2.

EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.

Balaur I, Saqi M, Barat A, Lysenko A, Mazein A, Rawlings CJ, Ruskin HJ, Auffray C.

J Comput Biol. 2017 Oct;24(10):969-980. doi: 10.1089/cmb.2016.0095. Epub 2016 Sep 14.

PMID:
27627442
3.

Theoretical cross-comparative analysis on dynamics of small intestine and colon crypts during cancer initiation.

Roznovăţ IA, Ruskin HJ.

IET Syst Biol. 2015 Dec;9(6):259-67. doi: 10.1049/iet-syb.2015.0048.

PMID:
26577160
4.

Computational Models & Methods in Systems Biology & Medicine.

Ruskin HJ, Roznovat IA.

IET Syst Biol. 2015 Dec;9(6):217. doi: 10.1049/iet-syb.2015.0078. No abstract available.

PMID:
26577155
5.
6.

Integrating Colon Cancer Microarray Data: Associating Locus-Specific Methylation Groups to Gene Expression-Based Classifications.

Barat A, Ruskin HJ, Byrne AT, Prehn JH.

Microarrays (Basel). 2015 Nov 23;4(4):630-46. doi: 10.3390/microarrays4040630.

7.

Data Integration for Microarrays: Enhanced Inference for Gene Regulatory Networks.

Sîrbu A, Crane M, Ruskin HJ.

Microarrays (Basel). 2015 May 14;4(2):255-69. doi: 10.3390/microarrays4020255.

8.

A computational model for genetic and epigenetic signals in colon cancer.

Roznovăţ IA, Ruskin HJ.

Interdiscip Sci. 2013 Sep;5(3):175-86. doi: 10.1007/s12539-013-0172-y. Epub 2013 Dec 4.

PMID:
24307409
9.

RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering.

Sîrbu A, Kerr G, Crane M, Ruskin HJ.

PLoS One. 2012;7(12):e50986. doi: 10.1371/journal.pone.0050986. Epub 2012 Dec 10.

10.

The landscape for epigenetic/epigenomic biomedical resources.

Shakya K, O'Connell MJ, Ruskin HJ.

Epigenetics. 2012 Sep;7(9):982-6. Epub 2012 Aug 9. Review.

11.

Wisdom of crowds for robust gene network inference.

Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium, Kellis M, Collins JJ, Stolovitzky G.

Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016.

12.

Colon cancer associated genes exhibit signatures of positive selection at functionally significant positions.

Morgan CC, Shakya K, Webb A, Walsh TA, Lynch M, Loscher CE, Ruskin HJ, O'Connell MJ.

BMC Evol Biol. 2012 Jul 12;12:114. doi: 10.1186/1471-2148-12-114.

13.

Integrating heterogeneous gene expression data for gene regulatory network modelling.

Sîrbu A, Ruskin HJ, Crane M.

Theory Biosci. 2012 Jun;131(2):95-102. doi: 10.1007/s12064-011-0133-0. Epub 2011 Sep 24.

PMID:
21948152
14.

Computational micromodel for epigenetic mechanisms.

Raghavan K, Ruskin HJ, Perrin D, Goasmat F, Burns J.

PLoS One. 2010 Nov 30;5(11):e14031. doi: 10.1371/journal.pone.0014031.

15.

Cross-platform microarray data normalisation for regulatory network inference.

Sîrbu A, Ruskin HJ, Crane M.

PLoS One. 2010 Nov 12;5(11):e13822. doi: 10.1371/journal.pone.0013822.

16.

Model refinement through high-performance computing: an agent-based HIV example.

Perrin D, Ruskin HJ, Crane M.

Immunome Res. 2010 Sep 27;6 Suppl 1:S3. doi: 10.1186/1745-7580-6-S1-S3.

17.

Cell type-dependent, infection-induced, aberrant DNA methylation in gastric cancer.

Perrin D, Ruskin HJ, Niwa T.

J Theor Biol. 2010 May 21;264(2):570-7. doi: 10.1016/j.jtbi.2010.02.040. Epub 2010 Feb 26.

PMID:
20219476
18.

Comparison of evolutionary algorithms in gene regulatory network model inference.

Sîrbu A, Ruskin HJ, Crane M.

BMC Bioinformatics. 2010 Jan 27;11:59. doi: 10.1186/1471-2105-11-59.

19.

3D Multi-agent models for protein release from PLGA spherical particles with complex inner morphologies.

Barat A, Ruskin HJ, Crane M.

Theory Biosci. 2008 Jun;127(2):95-105. doi: 10.1007/s12064-008-0041-0. Epub 2008 Apr 26.

PMID:
18438693
20.

Quantitative multi-agent models for simulating protein release from PLGA bioerodible nano- and microspheres.

Barat A, Crane M, Ruskin HJ.

J Pharm Biomed Anal. 2008 Sep 29;48(2):361-8. doi: 10.1016/j.jpba.2008.02.031. Epub 2008 Mar 8.

PMID:
18436414

Supplemental Content

Loading ...
Support Center