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Items: 1 to 20 of 35

1.

Oligonucleotide Primers with G8AE-Clamp Modifications for RT-qPCR Detection of the Low-Copy dsRNA.

Zatsepin TS, Varizhuk AM, Dedkov VG, Shipulin GA, Aralov AV.

Methods Mol Biol. 2019;1973:281-297. doi: 10.1007/978-1-4939-9216-4_18.

PMID:
31016709
2.

Molecular Epidemiology of HIV-1 Subtype G in the Russian Federation.

Murzakova A, Kireev D, Baryshev P, Lopatukhin A, Serova E, Shemshura A, Saukhat S, Kolpakov D, Matuzkova A, Suladze A, Nosik M, Eremin V, Shipulin G, Pokrovsky V.

Viruses. 2019 Apr 16;11(4). pii: E348. doi: 10.3390/v11040348.

3.

Improved Protocols of ITS1-Based Metabarcoding and Their Application in the Analysis of Plant-Containing Products.

Omelchenko DO, Speranskaya AS, Ayginin AA, Khafizov K, Krinitsina AA, Fedotova AV, Pozdyshev DV, Shtratnikova VY, Kupriyanova EV, Shipulin GA, Logacheva MD.

Genes (Basel). 2019 Feb 7;10(2). pii: E122. doi: 10.3390/genes10020122.

4.

Novel homo Yin-Yang probes improve sensitivity in RT-qPCR detection of low copy HIV RNA.

Farzan VM, Kvach MV, Aparin IO, Kireev DE, Prikazchikova TA, Ustinov AV, Shmanai VV, Shipulin GA, Korshun VA, Zatsepin TS.

Talanta. 2019 Mar 1;194:226-232. doi: 10.1016/j.talanta.2018.10.043. Epub 2018 Oct 16.

PMID:
30609524
5.

First whole genome sequencing of Russian isolate of Capnocytophaga canimorsus, opportunistic pathogen causing lethal sepsis.

Shelenkov AA, Karan LS, Mihaylova YV, Yanushevich YG, Shipulin GA, Shagin DA.

Microb Pathog. 2018 Dec;125:493-496. doi: 10.1016/j.micpath.2018.10.020. Epub 2018 Oct 18.

PMID:
30342910
6.

The Study of Viral RNA Diversity in Bird Samples Using De Novo Designed Multiplex Genus-Specific Primer Panels.

Ayginin AA, Pimkina EV, Matsvay AD, Speranskaya AS, Safonova MV, Blinova EA, Artyushin IV, Dedkov VG, Shipulin GA, Khafizov K.

Adv Virol. 2018 Aug 12;2018:3248285. doi: 10.1155/2018/3248285. eCollection 2018.

7.

Optimization of Polycistronic Anti-CCR5 Artificial microRNA Leads to Improved Accuracy of Its Lentiviral Vector Transfer and More Potent Inhibition of HIV-1 in CD4⁺ T-Cells.

Urusov F, Glazkova D, Omelchenko D, Bogoslovskaya E, Tsyganova G, Kersting K, Shipulin G, Pokrovsky V.

Cells. 2018 Feb 4;7(2). pii: E10. doi: 10.3390/cells7020010.

8.

Evaluation of the population heterogeneity of TBEV laboratory variants using high-throughput sequencing.

Litov AG, Deviatkin AA, Goptar IA, Dedkov VG, Gmyl AP, Markelov ML, Shipulin GA, Karganova GG.

J Gen Virol. 2018 Feb;99(2):240-245. doi: 10.1099/jgv.0.001003.

PMID:
29393021
9.

Sensitive Multiplex Real-time RT-qPCR Assay for the Detection of Filoviruses.

Dedkov VG, Magassouba N, Safonova MV, Bodnev SA, Pyankov OV, Camara J, Sylla B, Agafonov AP, Maleev VV, Shipulin GA.

Health Secur. 2018 Jan/Feb;16(1):14-21. doi: 10.1089/hs.2017.0027. Epub 2018 Jan 19.

PMID:
29350545
10.

Whole-Genome Sequencing of Six Borrelia miyamotoi Clinical Strains Isolated in Russia.

Kuleshov KV, Koetsveld J, Goptar IA, Markelov ML, Kolyasnikova NM, Sarksyan DS, Toporkova MG, Kirdyashkina NP, Shipulin GA, Hovius JW, Platonov AE.

Genome Announc. 2018 Jan 4;6(1). pii: e01424-17. doi: 10.1128/genomeA.01424-17.

11.

VirGenA: a reference-based assembler for variable viral genomes.

Fedonin GG, Fantin YS, Favorov AV, Shipulin GA, Neverov AD.

Brief Bioinform. 2019 Jan 18;20(1):15-25. doi: 10.1093/bib/bbx079.

12.

Automated Solid-Phase Click Synthesis of Oligonucleotide Conjugates: From Small Molecules to Diverse N-Acetylgalactosamine Clusters.

Farzan VM, Ulashchik EA, Martynenko-Makaev YV, Kvach MV, Aparin IO, Brylev VA, Prikazchikova TA, Maklakova SY, Majouga AG, Ustinov AV, Shipulin GA, Shmanai VV, Korshun VA, Zatsepin TS.

Bioconjug Chem. 2017 Oct 18;28(10):2599-2607. doi: 10.1021/acs.bioconjchem.7b00462. Epub 2017 Oct 4.

PMID:
28921968
13.

A neonatal death associated with Crimean-Congo hemorrhagic fever (Republic of Kalmykia, Russia, June 2016).

Dedkov VG, Shchelkanov MY, Bushkieva BT, Rudenko TA, Kurdyukova OV, Galkina IV, Sapotsky MV, Blinova EA, Dzhambinov SD, Shipulin GA.

Antiviral Res. 2017 Oct;146:146-148. doi: 10.1016/j.antiviral.2017.08.018. Epub 2017 Sep 4. No abstract available.

PMID:
28870741
14.

Enrichment of Viral Nucleic Acids by Solution Hybrid Selection with Genus Specific Oligonucleotides.

Deviatkin AA, Lukashev AN, Markelov MM, Gmyl LV, Shipulin GA.

Sci Rep. 2017 Aug 29;7(1):9752. doi: 10.1038/s41598-017-10342-w.

15.

Synthesis of oligonucleotides containing novel G-clamp analogue with C8-tethered group in phenoxazine ring: Implication to qPCR detection of the low-copy Kemerovo virus dsRNA.

Varizhuk AM, Zatsepin TS, Golovin AV, Belyaev ES, Kostyukevich YI, Dedkov VG, Shipulin GA, Shpakovski GV, Aralov AV.

Bioorg Med Chem. 2017 Jul 15;25(14):3597-3605. doi: 10.1016/j.bmc.2017.03.062. Epub 2017 Mar 31.

PMID:
28396019
16.

The phylodynamics of the rabies virus in the Russian Federation.

Deviatkin AA, Lukashev AN, Poleshchuk EM, Dedkov VG, Tkachev SE, Sidorov GN, Karganova GG, Galkina IV, Shchelkanov MY, Shipulin GA.

PLoS One. 2017 Feb 22;12(2):e0171855. doi: 10.1371/journal.pone.0171855. eCollection 2017.

17.

Specificity of SNP detection with molecular beacons is improved by stem and loop separation with spacers.

Farzan VM, Markelov ML, Skoblov AY, Shipulin GA, Zatsepin TS.

Analyst. 2017 Mar 13;142(6):945-950. doi: 10.1039/c6an02441f.

PMID:
28220155
18.

Complete Genome Sequence of Human Adenovirus 7 Associated with Fatal Adult Pneumonia.

Yatsyshina SB, Ageeva MR, Deviatkin AA, Pimkina EV, Markelov ML, Dedkov VG, Safonova MV, Shumilina EY, Lukashev AN, Shipulin GA.

Genome Announc. 2016 Oct 27;4(5). pii: e01204-16. doi: 10.1128/genomeA.01204-16.

19.

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX.

Nat Microbiol. 2016 Oct 3;1(11):16209. doi: 10.1038/nmicrobiol.2016.209. No abstract available.

PMID:
27694821
20.

Travel-Associated Vibrio cholerae O1 El Tor, Russia.

Kuleshov KV, Vodop'ianov SO, Dedkov VG, Markelov ML, Deviatkin AA, Kruglikov VD, Vodop'ianov AS, Pisanov RV, Mazrukho AB, Titova SV, Maleev VV, Shipulin GA.

Emerg Infect Dis. 2016 Nov;22(11):2006-2008. doi: 10.3201/eid2211.151727. No abstract available.

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