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Items: 1 to 20 of 24

1.

Volatile Evolution of Long Non-Coding RNA Repertoire in Retinal Pigment Epithelium: Insights from Comparison of Bovine and Human RNA Expression Profiles.

Postnikova OA, Rogozin IB, Samuel W, Nudelman G, Babenko VN, Poliakov E, Redmond TM.

Genes (Basel). 2019 Mar 8;10(3). pii: E205. doi: 10.3390/genes10030205.

2.

Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma.

Tome-Garcia J, Erfani P, Nudelman G, Tsankov AM, Katsyv I, Tejero R, Bin Zhang, Walsh M, Friedel RH, Zaslavsky E, Tsankova NM.

Nat Commun. 2018 Oct 1;9(1):4020. doi: 10.1038/s41467-018-06258-2.

3.

High resolution annotation of zebrafish transcriptome using long-read sequencing.

Nudelman G, Frasca A, Kent B, Sadler KC, Sealfon SC, Walsh MJ, Zaslavsky E.

Genome Res. 2018 Sep;28(9):1415-1425. doi: 10.1101/gr.223586.117. Epub 2018 Jul 30.

4.

Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone.

Ruf-Zamojski F, Fribourg M, Ge Y, Nair V, Pincas H, Zaslavsky E, Nudelman G, Tuminello SJ, Watanabe H, Turgeon JL, Sealfon SC.

Front Endocrinol (Lausanne). 2018 Feb 14;9:34. doi: 10.3389/fendo.2018.00034. eCollection 2018.

5.

Pandemic H1N1 influenza A viruses suppress immunogenic RIPK3-driven dendritic cell death.

Hartmann BM, Albrecht RA, Zaslavsky E, Nudelman G, Pincas H, Marjanovic N, Schotsaert M, Martínez-Romero C, Fenutria R, Ingram JP, Ramos I, Fernandez-Sesma A, Balachandran S, García-Sastre A, Sealfon SC.

Nat Commun. 2017 Dec 5;8(1):1931. doi: 10.1038/s41467-017-02035-9.

6.

DNA polymerase η mutational signatures are found in a variety of different types of cancer.

Rogozin IB, Goncearenco A, Lada AG, De S, Yurchenko V, Nudelman G, Panchenko AR, Cooper DN, Pavlov YI.

Cell Cycle. 2018;17(3):348-355. doi: 10.1080/15384101.2017.1404208. Epub 2018 Feb 15.

7.

Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR+ Populations with Stem Cell Properties.

Tome-Garcia J, Tejero R, Nudelman G, Yong RL, Sebra R, Wang H, Fowkes M, Magid M, Walsh M, Silva-Vargas V, Zaslavsky E, Friedel RH, Doetsch F, Tsankova NM.

Stem Cell Reports. 2017 May 9;8(5):1421-1429. doi: 10.1016/j.stemcr.2017.03.019. Epub 2017 Apr 20.

8.

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers.

Rogozin IB, Lada AG, Goncearenco A, Green MR, De S, Nudelman G, Panchenko AR, Koonin EV, Pavlov YI.

Sci Rep. 2016 Dec 7;6:38133. doi: 10.1038/srep38133.

9.

The Transcriptional Activator Krüppel-like Factor-6 Is Required for CNS Myelination.

Laitman BM, Asp L, Mariani JN, Zhang J, Liu J, Sawai S, Chapouly C, Horng S, Kramer EG, Mitiku N, Loo H, Burlant N, Pedre X, Hara Y, Nudelman G, Zaslavsky E, Lee YM, Braun DA, Lu QR, Narla G, Raine CS, Friedman SL, Casaccia P, John GR.

PLoS Biol. 2016 May 23;14(5):e1002467. doi: 10.1371/journal.pbio.1002467. eCollection 2016 May.

10.

MOCCASIN: converting MATLAB ODE models to SBML.

Gómez HF, Hucka M, Keating SM, Nudelman G, Iber D, Sealfon SC.

Bioinformatics. 2016 Jun 15;32(12):1905-6. doi: 10.1093/bioinformatics/btw056. Epub 2016 Feb 9.

11.

Astrocytic TYMP and VEGFA drive blood-brain barrier opening in inflammatory central nervous system lesions.

Chapouly C, Tadesse Argaw A, Horng S, Castro K, Zhang J, Asp L, Loo H, Laitman BM, Mariani JN, Straus Farber R, Zaslavsky E, Nudelman G, Raine CS, John GR.

Brain. 2015 Jun;138(Pt 6):1548-67. doi: 10.1093/brain/awv077. Epub 2015 Mar 23.

12.

Combinatorial cytokine code generates anti-viral state in dendritic cells.

Hartmann BM, Marjanovic N, Nudelman G, Moran TM, Sealfon SC.

Front Immunol. 2014 Feb 26;5:73. doi: 10.3389/fimmu.2014.00073. eCollection 2014.

13.

Noise propagation through extracellular signaling leads to fluctuations in gene expression.

Tabbaa OP, Nudelman G, Sealfon SC, Hayot F, Jayaprakash C.

BMC Syst Biol. 2013 Sep 25;7:94. doi: 10.1186/1752-0509-7-94.

14.

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.

Zaslavsky E, Nudelman G, Marquez S, Hershberg U, Hartmann BM, Thakar J, Sealfon SC, Kleinstein SH.

BMC Bioinformatics. 2013;14 Suppl 6:S1. doi: 10.1186/1471-2105-14-S6-S1. Epub 2013 Apr 17.

15.

Super-resolution imaging reveals the internal architecture of nano-sized syntaxin clusters.

Bar-On D, Wolter S, van de Linde S, Heilemann M, Nudelman G, Nachliel E, Gutman M, Sauer M, Ashery U.

J Biol Chem. 2012 Aug 3;287(32):27158-67. doi: 10.1074/jbc.M112.353250. Epub 2012 Jun 14.

16.

Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation.

Shimoni Y, Nudelman G, Hayot F, Sealfon SC.

PLoS One. 2011;6(12):e29298. doi: 10.1371/journal.pone.0029298. Epub 2011 Dec 21.

17.

Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells.

Hu J, Nudelman G, Shimoni Y, Kumar M, Ding Y, López C, Hayot F, Wetmur JG, Sealfon SC.

PLoS One. 2011 Feb 8;6(2):e16614. doi: 10.1371/journal.pone.0016614.

18.

Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase.

Patil S, Pincas H, Seto J, Nudelman G, Nudelman I, Sealfon SC.

BMC Syst Biol. 2010 Oct 7;4:137. doi: 10.1186/1752-0509-4-137.

19.

Research resource: Gonadotropin-releasing hormone receptor-mediated signaling network in LbetaT2 cells: a pathway-based web-accessible knowledgebase.

Fink MY, Pincas H, Choi SG, Nudelman G, Sealfon SC.

Mol Endocrinol. 2010 Sep;24(9):1863-71. doi: 10.1210/me.2009-0530. Epub 2010 Jun 30.

20.

Coregulation mapping based on individual phenotypic variation in response to virus infection.

Nudelman G, Ge Y, Hu J, Kumar M, Seto J, Duke JL, Kleinstein SH, Hayot F, Sealfon SC, Wetmur JG.

Immunome Res. 2010 Mar 18;6:2. doi: 10.1186/1745-7580-6-2.

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