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Items: 10

1.

Interactions between Triterpenes and a P-I Type Snake Venom Metalloproteinase: Molecular Simulations and Experiments.

Preciado LM, PereaƱez JA, Azhagiya Singam ER, Comer J.

Toxins (Basel). 2018 Sep 28;10(10). pii: E397. doi: 10.3390/toxins10100397.

2.

Decomposing Dynamical Couplings in Mutated scFv Antibody Fragments into Stabilizing and Destabilizing Effects.

Ettayapuram Ramaprasad AS, Uddin S, Casas-Finet J, Jacobs DJ.

J Am Chem Soc. 2017 Dec 6;139(48):17508-17517. doi: 10.1021/jacs.7b09268. Epub 2017 Nov 22.

3.

JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories.

David CC, Singam ERA, Jacobs DJ.

BMC Bioinformatics. 2017 May 25;18(1):271. doi: 10.1186/s12859-017-1676-y.

4.

Identification of an Electrostatic Ruler Motif for Sequence-Specific Binding of Collagenase to Collagen.

Subramanian SR, Singam ER, Berinski M, Subramanian V, Wade RC.

J Phys Chem B. 2016 Aug 25;120(33):8580-9. doi: 10.1021/acs.jpcb.6b02573. Epub 2016 Jun 1.

PMID:
27245212
5.

Influence of the size and charge of gold nanoclusters on complexation with siRNA: a molecular dynamics simulation study.

Mudedla SK, Azhagiya Singam ER, Balamurugan K, Subramanian V.

Phys Chem Chem Phys. 2015 Nov 11;17(45):30307-17. doi: 10.1039/c5cp05034k.

PMID:
26508176
6.

AntiAngioPred: A Server for Prediction of Anti-Angiogenic Peptides.

Ettayapuram Ramaprasad AS, Singh S, Gajendra P S R, Venkatesan S.

PLoS One. 2015 Sep 3;10(9):e0136990. doi: 10.1371/journal.pone.0136990. eCollection 2015.

7.

Investigation on interaction of tannic acid with type I collagen and its effect on thermal, enzymatic, and conformational stability for tissue engineering applications.

Velmurugan P, Singam ER, Jonnalagadda RR, Subramanian V.

Biopolymers. 2014 May;101(5):471-83. doi: 10.1002/bip.22405.

PMID:
23996786
8.

Molecular dynamic simulation studies on the effect of one residue chain staggering on the structure and stability of heterotrimeric collagen-like peptides with interruption.

Singam ER, Balamurugan K, Gopalakrishnan R, Subramanian SR, Subramanian V, Ramasami T.

Biopolymers. 2012 Nov;97(11):847-63. doi: 10.1002/bip.22085.

PMID:
22899360
9.

Adsorption of collagen onto single walled carbon nanotubes: a molecular dynamics investigation.

Gopalakrishnan R, Balamurugan K, Singam ER, Sundaraman S, Subramanian V.

Phys Chem Chem Phys. 2011 Jul 28;13(28):13046-57. doi: 10.1039/c1cp20107g. Epub 2011 Jun 21.

PMID:
21695295
10.

3D-QSAR and docking studies on the HEPT derivatives of HIV-1 reverse transcriptase.

Latha RS, Vijayaraj R, Singam ER, Chitra K, Subramanian V.

Chem Biol Drug Des. 2011 Sep;78(3):418-26. doi: 10.1111/j.1747-0285.2011.01162.x. Epub 2011 Jul 29.

PMID:
21689378

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