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Items: 1 to 20 of 96

1.

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design.

Metsky HC, Siddle KJ, Gladden-Young A, Qu J, Yang DK, Brehio P, Goldfarb A, Piantadosi A, Wohl S, Carter A, Lin AE, Barnes KG, Tully DC, Corleis B, Hennigan S, Barbosa-Lima G, Vieira YR, Paul LM, Tan AL, Garcia KF, Parham LA, Odia I, Eromon P, Folarin OA, Goba A; Viral Hemorrhagic Fever Consortium, Simon-Lorière E, Hensley L, Balmaseda A, Harris E, Kwon DS, Allen TM, Runstadler JA, Smole S, Bozza FA, Souza TML, Isern S, Michael SF, Lorenzana I, Gehrke L, Bosch I, Ebel G, Grant DS, Happi CT, Park DJ, Gnirke A, Sabeti PC, Matranga CB.

Nat Biotechnol. 2019 Feb;37(2):160-168. doi: 10.1038/s41587-018-0006-x. Epub 2019 Feb 4.

PMID:
30718881
2.

Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018.

Siddle KJ, Eromon P, Barnes KG, Mehta S, Oguzie JU, Odia I, Schaffner SF, Winnicki SM, Shah RR, Qu J, Wohl S, Brehio P, Iruolagbe C, Aiyepada J, Uyigue E, Akhilomen P, Okonofua G, Ye S, Kayode T, Ajogbasile F, Uwanibe J, Gaye A, Momoh M, Chak B, Kotliar D, Carter A, Gladden-Young A, Freije CA, Omoregie O, Osiemi B, Muoebonam EB, Airende M, Enigbe R, Ebo B, Nosamiefan I, Oluniyi P, Nekoui M, Ogbaini-Emovon E, Garry RF, Andersen KG, Park DJ, Yozwiak NL, Akpede G, Ihekweazu C, Tomori O, Okogbenin S, Folarin OA, Okokhere PO, MacInnis BL, Sabeti PC, Happi CT.

N Engl J Med. 2018 Nov 1;379(18):1745-1753. doi: 10.1056/NEJMoa1804498. Epub 2018 Oct 17.

3.

sEst: Accurate Sex-Estimation and Abnormality Detection in Methylation Microarray Data.

Jung CH, Park DJ, Georgeson P, Mahmood K, Milne RL, Southey MC, Pope BJ.

Int J Mol Sci. 2018 Oct 15;19(10). pii: E3172. doi: 10.3390/ijms19103172.

4.

Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood.

Choi K, Ryu H, Siddle KJ, Piantadosi A, Freimark L, Park DJ, Sabeti P, Han J.

Anal Chem. 2018 Apr 3;90(7):4657-4662. doi: 10.1021/acs.analchem.7b05200. Epub 2018 Mar 21.

5.

Is RNASEL:p.Glu265* a modifier of early-onset breast cancer risk for carriers of high-risk mutations?

Nguyen-Dumont T, Teo ZL, Hammet F, Roberge A, Mahmoodi M, Tsimiklis H, Park DJ, Pope BJ, Lonie A, Kapuscinski MK, Mahmood K; ABCFR, Goldgar DE, Giles GG, Winship I, Hopper JL, Southey MC.

BMC Cancer. 2018 Feb 8;18(1):165. doi: 10.1186/s12885-018-4028-z.

6.

FANCM and RECQL genetic variants and breast cancer susceptibility: relevance to South Poland and West Ukraine.

Nguyen-Dumont T, Myszka A, Karpinski P, Sasiadek MM, Akopyan H, Hammet F, Tsimiklis H, Park DJ, Pope BJ, Slezak R, Kitsera N, Siekierzynska A, Southey MC.

BMC Med Genet. 2018 Jan 19;19(1):12. doi: 10.1186/s12881-018-0524-x.

7.

Effect of slice excitation profile on ungated steady state cardiac perfusion imaging.

Wang H, DiBella EVR, Adluru G, Park DJ, Taylor MI, Bangerter NK.

Biomed Phys Eng Express. 2017 Apr;3(2). pii: 027001. doi: 10.1088/2057-1976/aa6228. Epub 2017 Mar 9.

8.

Hi-Plex for Simple, Accurate, and Cost-Effective Amplicon-based Targeted DNA Sequencing.

Pope BJ, Hammet F, Nguyen-Dumont T, Park DJ.

Methods Mol Biol. 2018;1712:53-70. doi: 10.1007/978-1-4939-7514-3_5.

PMID:
29224068
9.

Targeted massively parallel sequencing characterises the mutation spectrum of PALB2 in breast and ovarian cancer cases from Poland and Ukraine.

Myszka A, Nguyen-Dumont T, Karpinski P, Sasiadek MM, Akopyan H, Hammet F, Tsimiklis H, Park DJ, Pope BJ, Slezak R, Kitsera N, Siekierzynska A, Southey MC.

Fam Cancer. 2018 Jul;17(3):345-349. doi: 10.1007/s10689-017-0050-6.

10.

A novel Drosophila injury model reveals severed axons are cleared through a Draper/MMP-1 signaling cascade.

Purice MD, Ray A, Münzel EJ, Pope BJ, Park DJ, Speese SD, Logan MA.

Elife. 2017 Aug 21;6. pii: e23611. doi: 10.7554/eLife.23611.

11.

Zika virus evolution and spread in the Americas.

Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes KG, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC.

Nature. 2017 Jun 15;546(7658):411-415. doi: 10.1038/nature22402. Epub 2017 May 24.

12.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24.

13.

Variant effect prediction tools assessed using independent, functional assay-based datasets: implications for discovery and diagnostics.

Mahmood K, Jung CH, Philip G, Georgeson P, Chung J, Pope BJ, Park DJ.

Hum Genomics. 2017 May 16;11(1):10. doi: 10.1186/s40246-017-0104-8.

14.

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A.

Nature. 2017 Apr 20;544(7650):309-315. doi: 10.1038/nature22040. Epub 2017 Apr 12.

15.

Polarization-Dependent Optical Response in Anisotropic Nanoparticle-DNA Superlattices.

Sun L, Lin H, Park DJ, Bourgeois MR, Ross MB, Ku JC, Schatz GC, Mirkin CA.

Nano Lett. 2017 Apr 12;17(4):2313-2318. doi: 10.1021/acs.nanolett.6b05101. Epub 2017 Mar 30.

PMID:
28358518
16.

Quantitative techniques for musculoskeletal MRI at 7 Tesla.

Bangerter NK, Taylor MD, Tarbox GJ, Palmer AJ, Park DJ.

Quant Imaging Med Surg. 2016 Dec;6(6):715-730. doi: 10.21037/qims.2016.12.12. Review.

17.

Mutation screening of ACKR3 and COPS8 in kidney cancer cases from the CONFIRM study.

Mahmoodi M, Nguyen-Dumont T, Hammet F, Pope BJ, Park DJ, Southey MC, Darlow JM, Bruinsma F, Winship I.

Fam Cancer. 2017 Jul;16(3):411-416. doi: 10.1007/s10689-016-9961-x.

PMID:
28063109
18.

Directional emission from dye-functionalized plasmonic DNA superlattice microcavities.

Park DJ, Ku JC, Sun L, Lethiec CM, Stern NP, Schatz GC, Mirkin CA.

Proc Natl Acad Sci U S A. 2017 Jan 17;114(3):457-461. doi: 10.1073/pnas.1619802114. Epub 2017 Jan 4.

19.

Single nucleotide-level mapping of DNA double-strand breaks in human HEK293T cells.

Pope BJ, Mahmood K, Jung CH, Georgeson P, Park DJ.

Genom Data. 2016 Nov 11;11:43-45. eCollection 2017 Mar.

20.

Fine resolution mapping of double-strand break sites for human ribosomal DNA units.

Pope BJ, Mahmood K, Jung CH, Park DJ.

Genom Data. 2016 Aug 24;10:19-21. doi: 10.1016/j.gdata.2016.08.012. eCollection 2016 Dec.

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