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Items: 1 to 20 of 24

1.

Publisher Correction: Functional aspects of meningeal lymphatics in ageing and Alzheimer's disease.

Da Mesquita S, Louveau A, Vaccari A, Smirnov I, Cornelison RC, Kingsmore KM, Contarino C, Onengut-Gumuscu S, Farber E, Raper D, Viar KE, Powell RD, Baker W, Dabhi N, Bai R, Cao R, Hu S, Rich SS, Munson JM, Lopes MB, Overall CC, Acton ST, Kipnis J.

Nature. 2018 Dec;564(7734):E7. doi: 10.1038/s41586-018-0689-7.

PMID:
30397347
2.

Improving network inference algorithms using resampling methods.

Colby SM, McClure RS, Overall CC, Renslow RS, McDermott JE.

BMC Bioinformatics. 2018 Oct 12;19(1):376. doi: 10.1186/s12859-018-2402-0.

3.

CNS lymphatic drainage and neuroinflammation are regulated by meningeal lymphatic vasculature.

Louveau A, Herz J, Alme MN, Salvador AF, Dong MQ, Viar KE, Herod SG, Knopp J, Setliff JC, Lupi AL, Da Mesquita S, Frost EL, Gaultier A, Harris TH, Cao R, Hu S, Lukens JR, Smirnov I, Overall CC, Oliver G, Kipnis J.

Nat Neurosci. 2018 Oct;21(10):1380-1391. doi: 10.1038/s41593-018-0227-9. Epub 2018 Sep 17.

4.

Functional aspects of meningeal lymphatics in ageing and Alzheimer's disease.

Da Mesquita S, Louveau A, Vaccari A, Smirnov I, Cornelison RC, Kingsmore KM, Contarino C, Onengut-Gumuscu S, Farber E, Raper D, Viar KE, Powell RD, Baker W, Dabhi N, Bai R, Cao R, Hu S, Rich SS, Munson JM, Lopes MB, Overall CC, Acton ST, Kipnis J.

Nature. 2018 Aug;560(7717):185-191. doi: 10.1038/s41586-018-0368-8. Epub 2018 Jul 25. Erratum in: Nature. 2018 Nov 5;:.

5.

Neuronal integrity and complement control synaptic material clearance by microglia after CNS injury.

Norris GT, Smirnov I, Filiano AJ, Shadowen HM, Cody KR, Thompson JA, Harris TH, Gaultier A, Overall CC, Kipnis J.

J Exp Med. 2018 Jul 2;215(7):1789-1801. doi: 10.1084/jem.20172244. Epub 2018 Jun 25.

6.

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS.

ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24.

PMID:
29795448
7.

Peripherally derived macrophages can engraft the brain independent of irradiation and maintain an identity distinct from microglia.

Cronk JC, Filiano AJ, Louveau A, Marin I, Marsh R, Ji E, Goldman DH, Smirnov I, Geraci N, Acton S, Overall CC, Kipnis J.

J Exp Med. 2018 Jun 4;215(6):1627-1647. doi: 10.1084/jem.20180247. Epub 2018 Apr 11.

8.

Microbiota alteration is associated with the development of stress-induced despair behavior.

Marin IA, Goertz JE, Ren T, Rich SS, Onengut-Gumuscu S, Farber E, Wu M, Overall CC, Kipnis J, Gaultier A.

Sci Rep. 2017 Mar 7;7:43859. doi: 10.1038/srep43859.

9.

Characterization of meningeal type 2 innate lymphocytes and their response to CNS injury.

Gadani SP, Smirnov I, Smith AT, Overall CC, Kipnis J.

J Exp Med. 2017 Feb;214(2):285-296. doi: 10.1084/jem.20161982. Epub 2016 Dec 19.

10.

Bayesian Model Averaging for Ensemble-Based Estimates of Solvation-Free Energies.

Gosink LJ, Overall CC, Reehl SM, Whitney PD, Mobley DL, Baker NA.

J Phys Chem B. 2017 Apr 20;121(15):3458-3472. doi: 10.1021/acs.jpcb.6b09198. Epub 2017 Jan 4.

11.

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS.

Nucleic Acids Res. 2016 Oct 14;44(18):8810-8825. Epub 2016 Aug 27.

12.

Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour.

Filiano AJ, Xu Y, Tustison NJ, Marsh RL, Baker W, Smirnov I, Overall CC, Gadani SP, Turner SD, Weng Z, Peerzade SN, Chen H, Lee KS, Scott MM, Beenhakker MP, Litvak V, Kipnis J.

Nature. 2016 Jul 21;535(7612):425-9. Epub 2016 Jul 13.

13.

Prediction of multi-drug resistance transporters using a novel sequence analysis method.

McDermott JE, Bruillard P, Overall CC, Gosink L, Lindemann SR.

Version 2. F1000Res. 2015 Mar 9 [revised 2015 Jan 1];4:60. doi: 10.12688/f1000research.6200.2. eCollection 2015.

14.

ChIP-Seq Analysis of the σE Regulon of Salmonella enterica Serovar Typhimurium Reveals New Genes Implicated in Heat Shock and Oxidative Stress Response.

Li J, Overall CC, Johnson RC, Jones MB, McDermott JE, Heffron F, Adkins JN, Cambronne ED.

PLoS One. 2015 Sep 21;10(9):e0138466. doi: 10.1371/journal.pone.0138466. eCollection 2015.

15.

The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity.

Payne SH, Monroe ME, Overall CC, Kiebel GR, Degan M, Gibbons BC, Fujimoto GM, Purvine SO, Adkins JN, Lipton MS, Smith RD.

Sci Data. 2015 Aug 18;2:150041. doi: 10.1038/sdata.2015.41. eCollection 2015.

16.

Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality.

Song HS, McClure RS, Bernstein HC, Overall CC, Hill EA, Beliaev AS.

Life (Basel). 2015 Mar 27;5(2):1127-40. doi: 10.3390/life5021127.

17.

Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σ(E)-regulated SPI-2 gene expression.

Li J, Overall CC, Nakayasu ES, Kidwai AS, Jones MB, Johnson RC, Nguyen NT, McDermott JE, Ansong C, Heffron F, Cambronne ED, Adkins JN.

Front Microbiol. 2015 Feb 10;6:27. doi: 10.3389/fmicb.2015.00027. eCollection 2015.

18.

Global analysis of Salmonella alternative sigma factor E on protein translation.

Li J, Nakayasu ES, Overall CC, Johnson RC, Kidwai AS, McDermott JE, Ansong C, Heffron F, Cambronne ED, Adkins JN.

J Proteome Res. 2015 Apr 3;14(4):1716-26. doi: 10.1021/pr5010423. Epub 2015 Feb 27.

19.

ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs.

Overall CC, Carr DA, Tabari ES, Thompson KJ, Weller JW.

BMC Bioinformatics. 2011 May 6;12:136. doi: 10.1186/1471-2105-12-136.

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