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Items: 18

1.

Engineered toxin-intein antimicrobials can selectively target and kill antibiotic-resistant bacteria in mixed populations.

López-Igual R, Bernal-Bayard J, Rodríguez-Patón A, Ghigo JM, Mazel D.

Nat Biotechnol. 2019 Apr 15. doi: 10.1038/s41587-019-0105-3. [Epub ahead of print]

PMID:
30988505
2.

Deep collaborative filtering for prediction of disease genes.

Zeng X, Lin Y, He Y, Lv L, Min X, Rodriguez-Paton A.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar 26. doi: 10.1109/TCBB.2019.2907536. [Epub ahead of print]

PMID:
30932845
3.

Computational methods for identifying the critical nodes in biological networks.

Liu X, Hong Z, Liu J, Lin Y, Rodríguez-Patón A, Zou Q, Zeng X.

Brief Bioinform. 2019 Feb 12. doi: 10.1093/bib/bbz011. [Epub ahead of print]

PMID:
30753282
4.

Spiking Neural P Systems With Learning Functions.

Song T, Pan L, Wu T, Zheng P, Wong MLD, Rodriguez-Paton A.

IEEE Trans Nanobioscience. 2019 Apr;18(2):176-190. doi: 10.1109/TNB.2019.2896981. Epub 2019 Feb 1.

PMID:
30716044
5.

Dynamical Task Switching in Cellular Computers.

Goñi-Moreno A, de la Cruz F, Rodríguez-Patón A, Amos M.

Life (Basel). 2019 Jan 26;9(1). pii: E14. doi: 10.3390/life9010014.

6.

A Parallel Workflow Pattern Modeling Using Spiking Neural P Systems With Colored Spikes.

Song T, Zeng X, Zheng P, Jiang M, Rodriguez-Paton A.

IEEE Trans Nanobioscience. 2018 Oct;17(4):474-484. doi: 10.1109/TNB.2018.2873221. Epub 2018 Oct 1.

PMID:
30281471
7.

Meta-Path Methods for Prioritizing Candidate Disease miRNAs.

Zhang X, Zou Q, Rodriguez-Paton A, Zeng X.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Jan-Feb;16(1):283-291. doi: 10.1109/TCBB.2017.2776280. Epub 2017 Nov 22.

PMID:
29990255
8.

Probability-based collaborative filtering model for predicting gene-disease associations.

Zeng X, Ding N, Rodríguez-Patón A, Zou Q.

BMC Med Genomics. 2017 Dec 28;10(Suppl 5):76. doi: 10.1186/s12920-017-0313-y.

9.

A New Improved and Extended Version of the Multicell Bacterial Simulator gro.

Gutiérrez M, Gregorio-Godoy P, Pérez Del Pulgar G, Muñoz LE, Sáez S, Rodríguez-Patón A.

ACS Synth Biol. 2017 Aug 18;6(8):1496-1508. doi: 10.1021/acssynbio.7b00003. Epub 2017 May 8.

PMID:
28438021
10.

BioBlocks: Programming Protocols in Biology Made Easier.

Gupta V, Irimia J, Pau I, Rodríguez-Patón A.

ACS Synth Biol. 2017 Jul 21;6(7):1230-1232. doi: 10.1021/acssynbio.6b00304. Epub 2017 Jan 24.

PMID:
28051850
11.

Sensitivity analysis of Repast computational ecology models with R/Repast.

Prestes García A, Rodríguez-Patón A.

Ecol Evol. 2016 Nov 21;6(24):8811-8831. doi: 10.1002/ece3.2580. eCollection 2016 Dec.

12.

Bacterial computing with engineered populations.

Amos M, Axmann IM, Blüthgen N, de la Cruz F, Jaramillo A, Rodriguez-Paton A, Simmel F.

Philos Trans A Math Phys Eng Sci. 2015 Jul 28;373(2046). pii: 20140218. doi: 10.1098/rsta.2014.0218. Review.

PMID:
26078340
13.

An autonomous in vivo dual selection protocol for boolean genetic circuits.

Beneš D, Sosík P, Rodríguez-Patón A.

Artif Life. Spring 2015;21(2):247-60. doi: 10.1162/ARTL_a_00160. Epub 2015 Jan 26.

PMID:
25622012
14.

DNA strand displacement system running logic programs.

Rodríguez-Patón A, Sainz de Murieta I, Sosík P.

Biosystems. 2014 Jan;115:5-12. doi: 10.1016/j.biosystems.2013.10.006. Epub 2013 Nov 5.

PMID:
24211259
15.

DNA biosensors that reason.

Sainz de Murieta I, Rodríguez-Patón A.

Biosystems. 2012 Aug;109(2):91-104. doi: 10.1016/j.biosystems.2012.02.005. Epub 2012 Mar 8.

PMID:
22406690
16.

A simple negative interaction in the positive transcriptional feedback of a single gene is sufficient to produce reliable oscillations.

Miró-Bueno JM, Rodríguez-Patón A.

PLoS One. 2011;6(11):e27414. doi: 10.1371/journal.pone.0027414. Epub 2011 Nov 10.

17.

Nanoinformatics and DNA-based computing: catalyzing nanomedicine.

Maojo V, Martin-Sanchez F, Kulikowski C, Rodriguez-Paton A, Fritts M.

Pediatr Res. 2010 May;67(5):481-9. doi: 10.1203/PDR.0b013e3181d6245e. Review.

PMID:
20118825
18.

A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem.

García-Arnau M, Manrique D, Rodríguez-Patón A, Sosík P.

Biosystems. 2007 Nov-Dec;90(3):687-97. Epub 2007 Feb 23.

PMID:
17418940

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