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Nucleic Acids Res. 1999 Jan 1;27(1):370-2.

O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins.

Author information

1
Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark. ramneek@cbs.dtu.dk

Abstract

O-GLYCBASE is a database of glycoproteins with O-linked glycosylation sites. Entries with at least one experimentally verified O-glycosylation site have been compiled from protein sequence databases and literature. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 4.0 contains 179 protein entries, an approximate 15% increase over the last version. Sequence logos representing the acceptor specificity patterns for GalNAc, GlcNAc, mannosyl and xylosyl transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu.dk/databases/OGLYCBASE/.

PMID:
9847232
PMCID:
PMC148187
[Indexed for MEDLINE]
Free PMC Article

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