Stochastic complexity as a taxonomic tool

Comput Methods Programs Biomed. 1998 Apr;56(1):11-22. doi: 10.1016/s0169-2607(98)00009-1.

Abstract

In this paper we propose a method of constructing a hierarchical classification based on the notion of stochastic complexity. Minimization of stochastic complexity amounts to maximization of the information content of the classification. A dendrogram is obtained by first finding the classification which minimizes stochastic complexity and then by step-wise merging of groups such that at each step there is a minimum loss of information. The method was applied to a database containing 5313 strains of Enterobacteriaceae. The results are in reasonable accordance with present-day views on the taxonomy of Enterobacteriaceae.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Enterobacteriaceae / classification*
  • Stochastic Processes