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Protein Sci. 1997 Jul;6(7):1587-90.

Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns.

Author information

1
Graduate Group in Biophysics, University of California San Francisco School of Medicine 94143-0448, USA.

Abstract

We have used cluster analysis to identify recurring sequence patterns that transcend protein family boundaries. A subset of these patterns occur predominantly in a single type of local structure in proteins. Here we characterize the three-dimensional structures and contexts in which these sequence patterns occur, with particular attention to the interactions responsible for their structural selectivity.

PMID:
9232660
PMCID:
PMC2143736
DOI:
10.1002/pro.5560060723
[Indexed for MEDLINE]
Free PMC Article

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