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Nucleic Acids Res. 1997 Jan 1;25(1):278-82.

O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins.

Author information

1
Center for Biological Sequence Analysis, The Technical University of Denmark, Building 206, DK-2800 Lyngby, Denmark. janhan@cbs.dtu.dk

Abstract

O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is now fully cross-referenced to the SWISS-PROT, PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.

PMID:
9016554
PMCID:
PMC146398
DOI:
10.1093/nar/25.1.278
[Indexed for MEDLINE]
Free PMC Article

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