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J Mol Biol. 1996 Aug 16;261(2):239-54.

How proteins recognize the TATA box.

Author information

1
Molecular Biology Institute, University of California at Los Angeles 90095, USA.

Abstract

The crystal structure of a complex of human TATA-binding protein with TATA-sequence DNA has been solved, complementing earlier TBP/DNA analyses from Saccharomyces cerevisiae and Arabidopsis thaliana. Special insight into TATA box specificity is provided by considering the TBP/DNA complex, not as a protein molecule with bound DNA, but as a DNA duplex with a particularly large minor groove ligand. This point of view provides explanations for: (1) why T.A base-pairs are required rather than C.G; (2) why an alternation of T and A bases is needed; (3) how TBP recognizes the upstream and downstream ends of the TATA box in order to bind properly; and (4) why the second half of the TATA box can be more variable than the first.

PMID:
8757291
DOI:
10.1006/jmbi.1996.0456
[Indexed for MEDLINE]

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