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Comput Appl Biosci. 1994 Jul;10(4):455-6.

A note about computing all local alignments.

Author information

1
Department of Computer Science and Engineering, Pennsylvania State University, University Park 16802.

Abstract

A recent paper in this journal by G. Barton proposed an efficient algorithm for locating locally optimal alignments between two sequences. Although the paper claims that all such alignments are found, the approach frequently fails to detect some of the significant matches. This note explains the deficiency.

PMID:
7804880
[Indexed for MEDLINE]

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