Inhibition of the RNA-directed DNA polymerase activity of a recombinant HIV-1 p51 reverse transcriptase by a p15 ribonuclease H domain

Biotechnol Appl Biochem. 1993 Feb;17(1):91-102.

Abstract

The polymerase domain of the human immunodeficiency virus type 1 (HIV-1) reverse transcriptase, called the p51 reverse transcriptase (p51 RT), was expressed in Escherichia coli. The recombinant protein also contained an N-terminal affinity tag designed to facilitate its purification by immobilized metal affinity chromatography. The purified p51 RT is a predominantly monomeric protein and it catalyses RNA-dependent DNA polymerization with poly(rA).oligo(dT) as the template.primer. Recently we have also reported the isolation of the recombinant RNAase H domain of HIV-1 RT that is enzymically active (Evans, Brawn, Deibel, Tarpley and Sharma [1991] J. Biol. Chem. 266, 20583-20585). The latter directly inhibits the RNA-dependent DNA polymerase activity of p51 RT. Kinetic experiments show that the p15 RNAase H-mediated inhibition of p51 RT is competitive with respect to the poly(rA).oligo(dT) template.primer (Ki = 320 +/- 50 nM), and it does not interfere directly with the binding of dTTP to the enzyme. Thus the kinetic behaviour is consistent with the binding of p15 RNAase H at or near the template.primer-binding site in this replicase. If the binding of the p15 RNAase H involves only a small segment of this protein, then identification of that segment may open up new opportunities towards the design of novel inhibitors of RNA-dependent DNA polymerase activity.

MeSH terms

  • Amino Acid Sequence
  • Chromatography, Affinity
  • Cloning, Molecular
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • HIV Reverse Transcriptase
  • HIV-1 / enzymology*
  • Kinetics
  • Molecular Sequence Data
  • Oligodeoxyribonucleotides / metabolism
  • Poly A / metabolism
  • Recombinant Proteins / metabolism
  • Reverse Transcriptase Inhibitors*
  • Ribonuclease H / metabolism*

Substances

  • Oligodeoxyribonucleotides
  • Recombinant Proteins
  • Reverse Transcriptase Inhibitors
  • Poly A
  • poly(rA).oligo(dT)
  • HIV Reverse Transcriptase
  • Ribonuclease H