Anchored PCR cloning of the novel HLA-Cw*0704 allele detected by PCR-SSP

Tissue Antigens. 1995 Jul;46(1):19-23. doi: 10.1111/j.1399-0039.1995.tb02471.x.

Abstract

The novel HLA-Cw*0704 allele, previously detected as the PCR-SSP variant Cw7/8v, has been cloned and sequenced from the homozygous typing cell KRO3/4 after amplification by anchored PCR. The nucleotide sequence of Cw*0704 is closely related to those of other Cw*07 alleles, but carries specific changes in exon 3 consistent with its serological behavior-a short Cw7 cross-reactive with antibodies directed against HLA-Cw8. Some of the substitutions of Cw*0704 have not been previously described for HLA-C but are found in HLA-B alleles and in published C sequences of non-human primates. The new allele carries a novel polymorphism in its 5' untranslated region (5' ut) that could be shared by all Cw*07 alleles. By PCR-SSP, Cw*0704 is a relatively common allele in English Caucasoids at a frequency of 4.6%. It is most often observed on HLA-B44 haplotypes previously described as HLA-C "blank", although linkage disequilibria with other HLA-B specificities have been found.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cloning, Molecular*
  • DNA Primers*
  • HLA-C Antigens / genetics*
  • HLA-C Antigens / isolation & purification
  • Humans
  • Molecular Sequence Data
  • Polymerase Chain Reaction*

Substances

  • DNA Primers
  • HLA-C Antigens

Associated data

  • GENBANK/D11383
  • GENBANK/X83394