The structural basis for the phospholipid remodeling by lysophosphatidylcholine acyltransferase 3

Nat Commun. 2021 Nov 25;12(1):6869. doi: 10.1038/s41467-021-27244-1.

Abstract

As the major component of cell membranes, phosphatidylcholine (PC) is synthesized de novo in the Kennedy pathway and then undergoes extensive deacylation-reacylation remodeling via Lands' cycle. The re-acylation is catalyzed by lysophosphatidylcholine acyltransferase (LPCAT) and among the four LPCAT members in human, the LPCAT3 preferentially introduces polyunsaturated acyl onto the sn-2 position of lysophosphatidylcholine, thereby modulating the membrane fluidity and membrane protein functions therein. Combining the x-ray crystallography and the cryo-electron microscopy, we determined the structures of LPCAT3 in apo-, acyl donor-bound, and acyl receptor-bound states. A reaction chamber was revealed in the LPCAT3 structure where the lysophosphatidylcholine and arachidonoyl-CoA were positioned in two tunnels connected near to the catalytic center. A side pocket was found expanding the tunnel for the arachidonoyl CoA and holding the main body of arachidonoyl. The structural and functional analysis provides the basis for the re-acylation of lysophosphatidylcholine and the substrate preference during the reactions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 1-Acylglycerophosphocholine O-Acyltransferase / chemistry*
  • 1-Acylglycerophosphocholine O-Acyltransferase / metabolism
  • Acyl Coenzyme A / chemistry
  • Acyl Coenzyme A / metabolism
  • Acylation
  • Animals
  • Catalytic Domain
  • Chickens
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Lysophosphatidylcholines / chemistry
  • Lysophosphatidylcholines / metabolism
  • Models, Molecular
  • Phospholipids / chemistry*
  • Phospholipids / metabolism
  • Protein Multimerization
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Acyl Coenzyme A
  • Lysophosphatidylcholines
  • Phospholipids
  • arachidonyl-coenzyme A
  • 1-Acylglycerophosphocholine O-Acyltransferase