Role of active site arginine residues in substrate recognition by PPM1A

Biochem Biophys Res Commun. 2021 Dec 3:581:1-5. doi: 10.1016/j.bbrc.2021.10.001. Epub 2021 Oct 6.

Abstract

Reversible protein phosphorylation is a key mechanism for regulating numerous cellular events. The metal-dependent protein phosphatases (PPM) are a family of Ser/Thr phosphatases, which uniquely recognize their substrate as a monomeric enzyme. In the case of PPM1A, it has the capacity to dephosphorylate a variety of substrates containing different sequences, but it is not yet fully understood how it recognizes its substrates. Here we analyzed the role of Arg33 and Arg186, two residues near the active site, on the dephosphorylation activity of PPM1A. The results showed that both Arg residues were critical for enzymatic activity and docking-model analysis revealed that Arg186 is positioned to interact with the substrate phosphate group. In addition, our results suggest that which Arg residue plays a more significant role in the catalysis depends directly on the substrate.

Keywords: Dephosphorylation; PPM1A; Ser/Thr phosphatase; Specificity; Substrate recognition.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Arginine / chemistry*
  • Arginine / metabolism
  • Catalytic Domain
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Humans
  • Isoenzymes / chemistry
  • Isoenzymes / genetics
  • Isoenzymes / metabolism
  • Kinetics
  • Models, Molecular
  • Mutation
  • Oligopeptides / chemistry*
  • Oligopeptides / metabolism
  • Phosphorylation
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Protein Phosphatase 2C / chemistry*
  • Protein Phosphatase 2C / genetics
  • Protein Phosphatase 2C / metabolism
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Isoenzymes
  • Oligopeptides
  • Recombinant Fusion Proteins
  • Arginine
  • PPM1A protein, human
  • Protein Phosphatase 2C