Application of WES Towards Molecular Investigation of Congenital Cataracts: Identification of Novel Alleles and Genes in a Hospital-Based Cohort of South India

Int J Mol Sci. 2020 Dec 16;21(24):9569. doi: 10.3390/ijms21249569.

Abstract

Congenital cataracts are the prime cause for irreversible blindness in children. The global incidence of congenital cataract is 2.2-13.6 per 10,000 births, with the highest prevalence in Asia. Nearly half of the congenital cataracts are of familial nature, with a predominant autosomal dominant pattern of inheritance. Over 38 of the 45 mapped loci for isolated congenital or infantile cataracts have been associated with a mutation in a specific gene. The clinical and genetic heterogeneity of congenital cataracts makes the molecular diagnosis a bit of a complicated task. Hence, whole exome sequencing (WES) was utilized to concurrently screen all known cataract genes and to examine novel candidate factors for a disease-causing mutation in probands from 11 pedigrees affected with familial congenital cataracts. Analysis of the WES data for known cataract genes identified causative mutations in six pedigrees (55%) in PAX6, FYCO1 (two variants), EPHA2, P3H2,TDRD7 and an additional likely causative mutation in a novel gene NCOA6, which represents the first dominant mutation in this gene. This study identifies a novel cataract gene not yet linked to human disease. NCOA6 is a transcriptional coactivator that interacts with nuclear hormone receptors to enhance their transcriptional activator function.

Keywords: EPHA2; FYCO1; NCOA6; P3H2; PAX6; TDRD7; WES; clinical heterogeneity; congenital cataract; genetic heterogeneity; hearing and speech impairment.

MeSH terms

  • Alleles*
  • Cataract / genetics*
  • Cataract / pathology
  • Ephrin-A2 / genetics
  • Female
  • Genetic Testing
  • Humans
  • Male
  • Microtubule-Associated Proteins / genetics
  • Mutation
  • Nuclear Receptor Coactivators / genetics*
  • PAX6 Transcription Factor / genetics
  • Pedigree
  • Procollagen-Proline Dioxygenase / genetics
  • Receptor, EphA2
  • Ribonucleoproteins / genetics
  • Whole Genome Sequencing

Substances

  • EPHA2 protein, human
  • Ephrin-A2
  • FYCO1 protein, human
  • Microtubule-Associated Proteins
  • NCOA6 protein, human
  • Nuclear Receptor Coactivators
  • PAX6 Transcription Factor
  • PAX6 protein, human
  • Ribonucleoproteins
  • Tdrd7 protein, human
  • Procollagen-Proline Dioxygenase
  • P3H2 protein, human
  • Receptor, EphA2