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J Biol Chem. 2019 Dec 27. pii: jbc.RA119.011577. doi: 10.1074/jbc.RA119.011577. [Epub ahead of print]

Structural and mechanistic insights into Hsp104 function revealed by synchrotron x-ray footprinting.

Author information

1
The Cleveland Clinic, United States.
2
University of Pennsylvania, United States.

Abstract

Hsp104 is a hexameric AAA+ ring translocase, which drives protein disaggregation in non-metazoan eukaryotes. Cryo-EM structures of Hsp104 have suggested potential mechanisms of substrate translocation, but precisely how Hsp104 hexamers disaggregate proteins remains incompletely understood. Here, we employed synchrotron X-ray footprinting to probe the solution-state structures of Hsp104 monomers in the absence of nucleotide and Hsp104 hexamers in the presence of ADP or ATPgS. Comparing side-chain solvent accessibilities between these three states illuminated aspects of Hsp104 structure and guided design of Hsp104 variants to probe disaggegase mechanism in vitro and in vivo. We established that Hsp104 hexamers switch from a more solvated state in ADP to a less solvated state in ATPgS, consistent with switching from an open spiral to a closed ring visualized by cryo-EM. We pinpointed critical N-terminal domain (NTD), NTD-nucleotide-binding domain 1 (NBD1) linker, NBD1, and middle domain (MD) residues that enable intrinsic disaggregase activity and Hsp70 collaboration. We uncovered NTD residues in the loop between helix A1 and A2 that can be substituted to enhance disaggregase activity. We elucidate a novel potentiated Hsp104 MD variant, Hsp104-RYD, which suppresses α-synuclein, FUS, and TDP-43 toxicity. We disambiguate a secondary pore-loop in NBD1, which collaborates with the NTD and NBD1 tyrosine-bearing pore loop to drive protein disaggregation. Finally, we define L601 in NBD2 as crucial for Hsp104 hexamerization. Collectively, our findings unveil new facets of Hsp104 structure and mechanism. They also connect regions undergoing large changes in solvation to functionality, which could have profound implications for protein engineering.

KEYWORDS:

ATPases associated with diverse cellular activities (AAA); FUS; Hsp104; TDP-43; alpha-synuclein; disaggregase; heat shock protein (HSP); mass spectrometry (MS); mutagenesis; protein chemical modification

PMID:
31882541
DOI:
10.1074/jbc.RA119.011577
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