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Microbiol Resour Announc. 2019 Aug 8;8(32). pii: e00673-19. doi: 10.1128/MRA.00673-19.

octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine.

Author information

1
Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, Iowa, USA.
2
Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
3
Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, USA.
4
Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, Iowa, USA amy.vincent@ars.usda.gov.
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Contributed equally

Abstract

The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.

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