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Mol Cells. 2019 Jul 31;42(7):512-522. doi: 10.14348/molcells.2019.0137.

Characterization of Structural Variations in the Context of 3D Chromatin Structure.

Kim K1,2, Eom J1,2, Jung I1.

Author information

1
Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.
2
These authors contributed equally to this work.

Abstract

Chromosomes located in the nucleus form discrete units of genetic material composed of DNA and protein complexes. The genetic information is encoded in linear DNA sequences, but its interpretation requires an understanding of threedimensional (3D) structure of the chromosome, in which distant DNA sequences can be juxtaposed by highly condensed chromatin packing in the space of nucleus to precisely control gene expression. Recent technological innovations in exploring higher-order chromatin structure have uncovered organizational principles of the 3D genome and its various biological implications. Very recently, it has been reported that large-scale genomic variations may disrupt higher-order chromatin organization and as a consequence, greatly contribute to disease-specific gene regulation for a range of human diseases. Here, we review recent developments in studying the effect of structural variation in gene regulation, and the detection and the interpretation of structural variations in the context of 3D chromatin structure.

KEYWORDS:

3D chromatin structure; Hi-C; gene regulation; structural variation; topologically associating domain

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